Detailed information NTG0633550

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: LQ771_RS11765
• Genome accession: NZ_CP088252
• Coordinates: 2550221..2551636 (+)
• Length: 471 a.a.
• NCBI ID: WP_231349602.1
• Uniprot ID: -
• Organism: Frateuria soli strain 5GH9-11
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 2545221..2556636

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LQ771_RS11750 (LQ771_11750)	sucD	2545848..2546720 (-)	873	WP_091334145.1	succinate--CoA ligase subunit alpha	-
LQ771_RS11755 (LQ771_11755)	sucC	2546832..2547992 (-)	1161	WP_231349601.1	ADP-forming succinate--CoA ligase subunit beta	-
LQ771_RS11760 (LQ771_11760)	-	2548328..2549908 (+)	1581	WP_231351903.1	HAMP domain-containing sensor histidine kinase	-
LQ771_RS11765 (LQ771_11765)	pilR	2550221..2551636 (+)	1416	WP_231349602.1	sigma-54 dependent transcriptional regulator	Regulator
LQ771_RS11770 (LQ771_11770)	-	2551785..2553359 (-)	1575	WP_231349603.1	hybrid sensor histidine kinase/response regulator	-
LQ771_RS11775 (LQ771_11775)	-	2553405..2553851 (-)	447	WP_231349604.1	response regulator	-
LQ771_RS11780 (LQ771_11780)	-	2553848..2555695 (-)	1848	WP_231349605.1	ATP-binding protein	-

Sequence

Protein

• Length: 471 a.a.
• Molecular weight: 50781.28 Da
• Isoelectric Point: 6.7764

>NTDB_id=633550 LQ771_RS11765 WP_231349602.1 2550221..2551636(+) (pilR) [Frateuria soli strain 5GH9-11]
MSAQTVLVIDDERDIRELLTITLGRMDLQVEAVGTVAEARRALGERSYDLCFTDMRLPDGTGHEVIELIAATHPDTPVAM
ITAYGNVDAAVNALKAGAFDFVSKPVDIQMLRRLVRTALQLAEERKSGGGATATGAAGRLVGDSPAMQQVRATIAKLARN
QAPVYIAGESGVGKELVARLIHEQGPRASGPFVPVNCGAIPSELMESEFFGHKKGSFTGASADKEGLFQAAHGGTLFLDE
VAELPLHMQVKLLRAIQEKAVRPIGAREEVPVDVRILSATHKDLGRLVEQGQFRQDLFYRINVIELRVPPLRERRGDVPQ
LAAFILRSLAAKSDGAPGRLKPDAQQALEEYDFPGNVRELENILERAMAMCDGDTIGAADLMLPQRPLRQPEPGNAMHAP
QPGAPVAAQPAAPHAAGPGSGVPLDDYISNLERTAIIKALEESRYNKTAAAKKLGITFRALRYKLKKLGID

Nucleotide

• Length: 1416 bp

>NTDB_id=633550 LQ771_RS11765 WP_231349602.1 2550221..2551636(+) (pilR) [Frateuria soli strain 5GH9-11]
ATGTCCGCACAGACCGTCCTGGTCATCGACGACGAACGCGACATCCGCGAGCTGCTTACCATCACGCTGGGTCGCATGGA
CCTGCAGGTGGAAGCGGTCGGCACCGTGGCCGAGGCCCGCCGGGCGCTGGGCGAACGCAGTTACGACTTGTGCTTCACCG
ACATGCGCCTGCCCGACGGCACCGGCCATGAGGTGATCGAACTGATCGCCGCCACCCACCCGGACACGCCGGTGGCGATG
ATCACCGCCTATGGCAACGTCGATGCGGCGGTGAACGCGCTCAAGGCGGGTGCCTTCGACTTCGTCTCCAAGCCGGTCGA
CATCCAGATGCTGCGCCGGCTGGTGCGCACCGCGCTGCAGCTGGCCGAGGAGCGCAAGAGCGGCGGCGGCGCGACGGCGA
CCGGCGCGGCCGGACGCCTGGTCGGCGACTCCCCGGCCATGCAGCAGGTACGCGCCACCATCGCCAAGCTCGCGCGCAAC
CAGGCACCGGTGTACATCGCCGGCGAGTCGGGCGTGGGCAAGGAGCTGGTCGCGCGCCTGATCCACGAACAGGGCCCGCG
CGCCAGCGGGCCGTTCGTGCCGGTCAACTGCGGCGCGATCCCGTCCGAGCTGATGGAAAGCGAATTCTTCGGCCACAAGA
AGGGCAGCTTCACCGGCGCCAGCGCCGACAAGGAAGGCCTGTTCCAGGCGGCCCACGGCGGCACGCTGTTCCTGGACGAG
GTCGCCGAGCTGCCGCTGCACATGCAGGTCAAGCTGTTGCGCGCGATCCAGGAAAAGGCGGTGCGCCCGATCGGCGCGCG
CGAGGAAGTGCCGGTGGACGTGCGCATCCTTTCGGCCACGCACAAGGACCTGGGCCGGCTGGTCGAGCAGGGGCAGTTCC
GGCAGGACCTGTTCTACCGCATCAACGTGATCGAGCTGCGCGTGCCGCCGCTGCGCGAGCGCCGCGGCGACGTGCCGCAG
CTGGCCGCCTTCATCCTGCGCTCGCTGGCCGCCAAGAGCGACGGCGCGCCCGGCCGGCTGAAGCCGGACGCGCAGCAGGC
GCTGGAGGAGTACGACTTCCCCGGCAACGTGCGCGAGCTGGAGAACATCCTCGAGCGCGCCATGGCGATGTGCGATGGCG
ACACCATCGGTGCCGCCGACCTGATGCTGCCACAGCGTCCGCTGCGCCAGCCCGAGCCGGGCAACGCGATGCACGCGCCG
CAGCCGGGCGCCCCGGTCGCTGCGCAGCCGGCCGCGCCGCACGCGGCCGGCCCGGGCAGCGGCGTGCCGCTGGACGACTA
CATCAGCAACCTCGAACGCACGGCGATCATCAAGGCGCTGGAAGAGTCGCGCTACAACAAGACCGCGGCGGCGAAGAAGC
TCGGCATCACCTTCCGCGCATTGCGTTACAAGCTCAAGAAGCTCGGCATCGACTAG

Domains

Predicted by InterproScan.

• Bacterial regulatory protein, Fis family (HTH_8) (429-468)

• Sigma-54 interaction domain (Sigma54_activat) (140-306)

• Response regulator receiver domain (Response_reg) (6-115)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	60.297	100	0.603
pilR	Acinetobacter baumannii strain A118	47.872	99.788	0.478