Detailed information NTG0633527

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: LQ772_RS13105
• Genome accession: NZ_CP088251
• Coordinates: 2806922..2808349 (+)
• Length: 475 a.a.
• NCBI ID: WP_231321344.1
• Uniprot ID: -
• Organism: Frateuria edaphi strain 5GH9-34
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 2801922..2813349

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LQ772_RS13090 (LQ772_13090)	sucD	2802823..2803695 (-)	873	WP_231321341.1	succinate--CoA ligase subunit alpha	-
LQ772_RS13095 (LQ772_13095)	sucC	2803709..2804869 (-)	1161	WP_231321343.1	ADP-forming succinate--CoA ligase subunit beta	-
LQ772_RS13100 (LQ772_13100)	-	2805208..2806788 (+)	1581	WP_231326041.1	HAMP domain-containing sensor histidine kinase	-
LQ772_RS13105 (LQ772_13105)	pilR	2806922..2808349 (+)	1428	WP_231321344.1	sigma-54 dependent transcriptional regulator	Regulator
LQ772_RS13110 (LQ772_13110)	-	2808482..2810056 (-)	1575	WP_231321345.1	response regulator	-
LQ772_RS13115 (LQ772_13115)	-	2810103..2810549 (-)	447	WP_231321346.1	response regulator	-
LQ772_RS13120 (LQ772_13120)	-	2810546..2812393 (-)	1848	WP_231321347.1	ATP-binding protein	-

Sequence

Protein

• Length: 475 a.a.
• Molecular weight: 51290.00 Da
• Isoelectric Point: 6.8362

>NTDB_id=633527 LQ772_RS13105 WP_231321344.1 2806922..2808349(+) (pilR) [Frateuria edaphi strain 5GH9-34]
MSAQTVLVIDDERDIRELLTITLGRMDLQVEAVGTVAEARRALGERSYDLCFTDMRLPDGTGHEVIELIAATHPDMPVAM
ITAYGNVDAAVNALKAGAFDFVSKPVDIQMLRRLVRTALQLAEERKSGGAATATGAAGRLVGDSPAMQQVRATITKLARN
QAPVYIAGESGVGKELVARLIHEQGPRASGPFVPVNCGAIPSELMESEFFGHKKGSFTGAGADKEGLFQAAHGGTLFLDE
VAELPLHMQVKLLRAIQEKAVRPIGAREEVPVDVRILSATHKDLARLVEQAQFRQDLFYRINVIELRVPPLRERRGDVPQ
LAAFILRSLAAKSGGAPGRLKPDAQQALEEYDFPGNVRELENILERAMAMCEGDTIGADDLMLPQRPLRQPEPVNAAHAA
MHAPQPGAPVAAQPAVPHAAGLGSGVPLDDYISNLERTAIIKALEESRYNKTAAAKKLGITFRALRYKLKKLGID

Nucleotide

• Length: 1428 bp

>NTDB_id=633527 LQ772_RS13105 WP_231321344.1 2806922..2808349(+) (pilR) [Frateuria edaphi strain 5GH9-34]
ATGTCCGCACAGACCGTCCTGGTCATCGACGACGAACGCGACATTCGCGAGCTGCTCACCATCACGCTTGGCCGCATGGA
CCTGCAGGTGGAAGCGGTGGGAACCGTGGCGGAGGCCCGCCGGGCGCTGGGCGAACGCAGTTACGACCTGTGCTTTACCG
ACATGCGCCTGCCCGACGGCACCGGCCATGAGGTGATCGAGCTGATCGCCGCCACCCATCCGGACATGCCGGTGGCGATG
ATCACCGCCTACGGCAACGTCGATGCGGCCGTGAACGCGCTCAAGGCCGGCGCCTTCGACTTCGTGTCCAAGCCGGTCGA
TATCCAGATGTTGCGCCGGCTGGTGCGCACCGCGCTGCAGCTGGCGGAGGAACGCAAGAGCGGTGGCGCCGCCACGGCGA
CCGGCGCGGCTGGCCGGCTGGTCGGCGACTCGCCGGCGATGCAGCAGGTGCGCGCGACCATCACCAAGCTCGCGCGCAAC
CAGGCGCCGGTGTACATCGCCGGCGAATCGGGCGTGGGCAAGGAGCTGGTCGCGCGGCTGATCCACGAGCAGGGTCCACG
CGCCAGCGGGCCGTTCGTGCCGGTCAACTGCGGCGCGATTCCGTCCGAGTTGATGGAAAGCGAATTCTTCGGCCACAAGA
AGGGCAGCTTCACCGGCGCCGGCGCCGACAAGGAAGGCCTTTTCCAGGCCGCCCATGGCGGCACGCTGTTCCTTGACGAG
GTGGCCGAGCTGCCGCTGCACATGCAGGTCAAGCTGCTGCGCGCGATCCAGGAGAAGGCGGTGCGCCCGATCGGTGCCCG
CGAGGAGGTGCCGGTGGACGTGCGCATCCTCTCGGCGACGCACAAGGACCTGGCCCGGCTGGTCGAGCAGGCCCAGTTCC
GCCAGGACCTGTTCTATCGCATCAACGTGATCGAGCTGCGCGTGCCGCCTCTTCGCGAGCGCCGGGGCGACGTGCCGCAA
CTCGCCGCCTTCATCCTGCGCTCGCTCGCTGCCAAGAGCGGCGGCGCGCCCGGCCGGCTGAAGCCGGACGCGCAGCAGGC
GCTGGAGGAATACGACTTCCCGGGCAACGTGCGCGAGCTGGAGAACATCCTCGAGCGCGCCATGGCGATGTGCGAGGGTG
ACACCATCGGCGCCGACGACCTGATGCTGCCGCAGCGACCGTTGCGCCAGCCGGAGCCGGTCAACGCCGCCCACGCGGCC
ATGCACGCGCCGCAGCCGGGCGCCCCGGTCGCCGCGCAGCCGGCCGTGCCCCACGCCGCCGGTCTGGGCAGCGGCGTACC
GCTGGACGACTACATCAGCAACCTCGAACGCACGGCGATCATCAAGGCGCTGGAAGAGTCGCGCTACAACAAGACCGCGG
CGGCGAAGAAGCTCGGCATCACCTTCCGGGCGCTGCGTTACAAGCTGAAAAAGCTCGGCATCGACTGA

Domains

Predicted by InterproScan.

• Bacterial regulatory protein, Fis family (HTH_8) (433-472)

• Response regulator receiver domain (Response_reg) (6-115)

• Sigma-54 interaction domain (Sigma54_activat) (140-306)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	60.421	100	0.604
pilR	Acinetobacter baumannii strain A118	47.146	99.579	0.469