Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   LPC09_RS18000 Genome accession   NZ_CP088245
Coordinates   3527849..3530233 (-) Length   794 a.a.
NCBI ID   WP_098797922.1    Uniprot ID   -
Organism   Metabacillus sp. B2-18     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3522849..3535233
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LPC09_RS17980 (LPC09_17980) - 3525818..3526879 (-) 1062 WP_098797919.1 AI-2E family transporter -
  LPC09_RS17985 (LPC09_17985) - 3526992..3527123 (-) 132 WP_121662931.1 YrzQ family protein -
  LPC09_RS17990 (LPC09_17990) - 3527138..3527329 (-) 192 WP_121665060.1 hypothetical protein -
  LPC09_RS17995 (LPC09_17995) - 3527346..3527822 (-) 477 WP_231307929.1 PRC-barrel domain-containing protein -
  LPC09_RS18000 (LPC09_18000) recD2 3527849..3530233 (-) 2385 WP_098797922.1 ATP-dependent RecD-like DNA helicase Machinery gene
  LPC09_RS18005 (LPC09_18005) - 3530258..3530917 (-) 660 WP_231307930.1 tetratricopeptide repeat protein -
  LPC09_RS18010 (LPC09_18010) mnmA 3531036..3532148 (-) 1113 WP_098797924.1 tRNA 2-thiouridine(34) synthase MnmA -
  LPC09_RS18015 (LPC09_18015) - 3532172..3533311 (-) 1140 WP_098797925.1 cysteine desulfurase family protein -
  LPC09_RS18020 (LPC09_18020) - 3533357..3533773 (-) 417 WP_098797926.1 Rrf2 family transcriptional regulator -
  LPC09_RS18025 (LPC09_18025) - 3533784..3534464 (-) 681 WP_176551114.1 YitT family protein -

Sequence

Protein


Download         Length: 794 a.a.        Molecular weight: 89233.95 Da        Isoelectric Point: 4.8211

>NTDB_id=633480 LPC09_RS18000 WP_098797922.1 3527849..3530233(-) (recD2) [Metabacillus sp. B2-18]
MQESADLFGEKERYVKGLVKVVIFHNEQNLYSVLKVRVHETSEDIEDKEITVTGYFPLLHEDDTYTFFGSFTNHPKFGLQ
FQTEHFRKEIPQTKEGIIQYLSSDLFKGIGKKTAEAIVEKLGESAISKILQNPSILDDIPKVNKDKAKQLVDALISHQGL
EQIMIALNQFGFGPQLAMKIYQTYQDETLTIIQENPYQLVQDVEGIGFVRADELGEHLGISGKSAERIKAACHYNVEHLC
LQEGHVYVTTEQLIVKTKELLDHSKKETIHESDIANEIIALGEEGKMIVEENRAYLPSLYFAEQGLVKNINKILDQTEYE
DLFPESEFLLSLGNLEERMNVQYAPTQKDAIQKALMSPMLLLTGGPGTGKTTVIKGIVELYSDLHGCSLDPKDYKKEETF
PIVLVAPTGRAAKRMSEATGMPAVTIHRLLKWNGADGFEHDEENPIAGKLLIIDEVSMVDIWIANQLFKALPKEIQVIMV
GDEDQLPSVGPGQVLRDLLASQVIPTVRLTDIYRQAEGSSIIELAHDIKEGRLPQNIAAPTSDRSFIRCSQAQMKEVIGK
IIQSALKKGYTAKDIQILAPMYRGPAGIDQLNKLLQELFNPKASGKRELNFGDVVYRNGDKVLQLVNQPDSNVFNGDIGE
IVSIFYAKENTEKEDMIVVSFDGNEVTYTKQDFNQFTHAFCCSIHKSQGSEFPIVIMPIVKGYYRMLRRNLIYTGVTRSK
RSLILCGELEALQWGISNNESSERQTSLMLKLGADQIKDSELDELQKQLPFPLEDANIGMENVTPYDFMEAGEI

Nucleotide


Download         Length: 2385 bp        

>NTDB_id=633480 LPC09_RS18000 WP_098797922.1 3527849..3530233(-) (recD2) [Metabacillus sp. B2-18]
ATGCAGGAGAGTGCAGATTTATTTGGAGAAAAAGAGCGCTATGTCAAAGGACTAGTTAAGGTTGTTATCTTTCATAATGA
ACAAAATCTTTATTCAGTGCTAAAAGTAAGAGTACATGAAACGAGTGAAGATATAGAAGATAAAGAAATAACTGTTACTG
GTTACTTTCCCCTCCTGCATGAAGATGATACCTACACTTTTTTTGGGTCGTTTACAAATCACCCTAAGTTTGGGCTTCAA
TTTCAAACCGAGCATTTTCGGAAAGAAATTCCTCAAACAAAAGAAGGAATTATACAATATCTTTCAAGTGATCTTTTTAA
AGGTATCGGAAAAAAAACAGCGGAAGCAATCGTTGAAAAATTGGGTGAATCCGCTATCTCAAAAATTTTACAAAACCCCT
CCATTTTGGATGATATTCCTAAGGTGAATAAAGATAAAGCAAAACAATTGGTTGATGCGCTAATTTCTCATCAAGGTCTT
GAGCAAATCATGATTGCGCTAAATCAGTTTGGATTTGGTCCACAGCTTGCGATGAAGATCTATCAAACTTACCAAGATGA
AACATTAACCATCATTCAGGAGAATCCTTATCAATTAGTACAGGATGTAGAAGGAATTGGTTTTGTTCGTGCGGATGAGC
TTGGAGAGCACCTTGGTATATCGGGGAAAAGTGCTGAACGAATTAAAGCAGCTTGTCATTACAATGTCGAGCACCTTTGC
CTACAGGAAGGTCATGTTTATGTTACAACGGAGCAGCTAATTGTTAAAACAAAGGAACTCCTTGATCACTCTAAAAAAGA
AACCATTCACGAGTCAGATATTGCAAATGAGATCATTGCACTAGGTGAAGAGGGAAAAATGATTGTTGAAGAAAACCGTG
CTTACCTTCCATCACTCTATTTTGCTGAACAGGGATTGGTAAAAAATATTAATAAGATCCTTGATCAAACAGAATATGAG
GATTTATTTCCTGAATCTGAATTTTTATTATCTCTGGGGAACCTTGAGGAAAGAATGAATGTGCAGTATGCACCAACACA
AAAAGATGCGATTCAGAAGGCGCTAATGTCACCTATGTTACTACTAACTGGAGGACCTGGTACAGGAAAAACAACCGTTA
TTAAAGGGATTGTAGAATTGTATTCAGATTTACATGGATGTTCTCTTGATCCTAAAGATTATAAAAAGGAAGAAACTTTT
CCAATTGTACTTGTAGCTCCAACAGGGAGAGCGGCAAAACGTATGAGTGAAGCCACAGGAATGCCGGCGGTTACGATTCA
TCGTCTTTTAAAATGGAATGGAGCAGATGGGTTTGAACACGATGAAGAAAACCCGATTGCAGGCAAACTTCTGATCATTG
ATGAAGTCTCAATGGTTGATATTTGGATTGCTAACCAATTATTTAAAGCTTTGCCTAAAGAAATTCAGGTTATCATGGTA
GGCGATGAGGATCAGCTTCCTTCAGTTGGTCCTGGTCAAGTGCTTCGTGATTTATTGGCATCTCAAGTGATACCAACGGT
TCGTCTGACAGATATTTACCGTCAGGCAGAGGGATCTTCTATCATTGAACTTGCCCACGATATAAAGGAAGGTAGACTTC
CACAAAATATAGCGGCACCAACTTCGGATCGTTCGTTTATTAGGTGTTCTCAAGCTCAGATGAAAGAAGTCATAGGTAAA
ATCATACAAAGTGCACTGAAAAAGGGATATACAGCAAAAGATATACAAATCCTGGCACCCATGTATAGAGGACCTGCTGG
TATTGATCAGCTAAATAAATTACTTCAGGAGCTTTTTAATCCAAAAGCATCTGGTAAAAGAGAATTGAATTTCGGTGATG
TTGTGTACCGAAATGGTGATAAAGTGCTTCAGCTCGTAAATCAGCCTGATAGCAACGTATTTAATGGAGATATTGGAGAG
ATTGTATCCATTTTTTATGCAAAAGAAAATACCGAAAAAGAAGATATGATCGTAGTTTCGTTCGATGGTAATGAAGTAAC
GTATACGAAACAAGATTTTAATCAATTTACACATGCCTTTTGTTGCTCTATTCATAAATCACAAGGAAGTGAGTTTCCAA
TTGTGATTATGCCTATTGTTAAAGGCTATTACCGAATGTTAAGACGAAATTTAATTTATACAGGAGTAACAAGAAGTAAA
AGGTCTCTTATTTTATGTGGTGAATTAGAAGCCTTACAATGGGGAATTTCAAATAATGAAAGTTCCGAAAGACAAACAAG
CTTAATGTTAAAGCTTGGAGCGGATCAAATAAAAGATTCAGAACTTGACGAACTACAAAAACAATTGCCATTCCCCCTTG
AGGATGCAAATATTGGCATGGAAAACGTTACACCGTATGACTTTATGGAAGCTGGCGAAATATAA

Domains

Predicted by InterproScan.

AAA domain (AAA_30)

(343-550)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(678-726)

Helix-hairpin-helix containing domain (HHH_RecD2)

(157-247)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(591-661)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

70.277

100

0.703