Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   STP1_RS02805 Genome accession   NC_022737
Coordinates   600381..600764 (-) Length   127 a.a.
NCBI ID   WP_023373316.1    Uniprot ID   -
Organism   Staphylococcus pasteuri SP1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 595381..605764
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  STP1_RS02780 (STP1_0526) thiE 595968..596609 (-) 642 WP_023373306.1 thiamine phosphate synthase -
  STP1_RS02785 (STP1_0527) thiM 596610..597401 (-) 792 WP_023373308.1 hydroxyethylthiazole kinase -
  STP1_RS02790 (STP1_0528) thiD 597394..598215 (-) 822 WP_023373310.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  STP1_RS02795 (STP1_0529) tenA 598208..598897 (-) 690 WP_023373312.1 thiaminase II -
  STP1_RS02800 (STP1_0530) - 599240..599971 (-) 732 WP_023373314.1 transglycosylase family protein -
  STP1_RS02805 (STP1_0531) ssb 600381..600764 (-) 384 WP_023373316.1 single-stranded DNA-binding protein Machinery gene
  STP1_RS02810 (STP1_0532) - 600951..601391 (+) 441 WP_023373318.1 YwpF-like family protein -
  STP1_RS02815 (STP1_0533) fabZ 601437..601877 (-) 441 WP_002451649.1 3-hydroxyacyl-ACP dehydratase FabZ -
  STP1_RS02820 (STP1_0534) murA 601921..603186 (-) 1266 WP_023373320.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  STP1_RS02825 (STP1_0535) - 603298..603531 (-) 234 WP_023373322.1 DUF1146 family protein -
  STP1_RS02830 (STP1_0536) - 603683..604087 (-) 405 WP_023373324.1 F0F1 ATP synthase subunit epsilon -
  STP1_RS02835 (STP1_0537) atpD 604107..605519 (-) 1413 WP_002451653.1 F0F1 ATP synthase subunit beta -

Sequence

Protein


Download         Length: 127 a.a.        Molecular weight: 14526.47 Da        Isoelectric Point: 7.0817

>NTDB_id=63342 STP1_RS02805 WP_023373316.1 600381..600764(-) (ssb) [Staphylococcus pasteuri SP1]
MLNKIVLVGRLTKDAQIFEKEEGSKIATFCVATERNYKDQNNEVACDYLYCKAFGKTAMNIEKYTSQGSLVGITGQMRSR
KYEKDNQTHFVTEVYVETIKFMSSKTKESNILSNELNEAQNECFHIG

Nucleotide


Download         Length: 384 bp        

>NTDB_id=63342 STP1_RS02805 WP_023373316.1 600381..600764(-) (ssb) [Staphylococcus pasteuri SP1]
ATGTTAAATAAAATAGTTTTAGTTGGCAGACTTACAAAGGATGCCCAAATTTTTGAAAAGGAGGAAGGTAGTAAGATAGC
AACATTTTGTGTTGCTACGGAAAGAAATTATAAAGATCAGAACAATGAAGTCGCATGCGATTACCTATATTGTAAAGCCT
TTGGTAAAACAGCTATGAATATTGAAAAGTATACATCACAAGGTTCTTTAGTAGGTATTACAGGTCAAATGCGATCTCGT
AAATACGAAAAAGATAATCAGACACATTTTGTAACTGAAGTTTATGTAGAAACAATTAAATTTATGTCCTCTAAGACAAA
AGAATCCAATATCCTCTCTAACGAATTAAATGAAGCACAAAATGAATGCTTTCATATAGGTTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

77.586

91.339

0.709
  ssb Staphylococcus aureus MW2

76.724

91.339

0.701

Multiple sequence alignment