Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   N6J21_RS21725 Genome accession   NZ_CP104794
Coordinates   4849061..4850470 (-) Length   469 a.a.
NCBI ID   WP_093723498.1    Uniprot ID   -
Organism   Streptomyces sp. FZ201     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4844061..4855470
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N6J21_RS21700 - 4844396..4844935 (-) 540 WP_093723516.1 SigE family RNA polymerase sigma factor -
  N6J21_RS21705 - 4845136..4846062 (-) 927 WP_093723494.1 A/G-specific adenine glycosylase -
  N6J21_RS21710 - 4846272..4846844 (+) 573 WP_261719122.1 DUF4352 domain-containing protein -
  N6J21_RS21715 - 4847018..4847839 (+) 822 WP_261719123.1 hypothetical protein -
  N6J21_RS21720 disA 4847855..4848979 (-) 1125 WP_093723497.1 DNA integrity scanning diadenylate cyclase DisA Machinery gene
  N6J21_RS21725 radA 4849061..4850470 (-) 1410 WP_093723498.1 DNA repair protein RadA Machinery gene
  N6J21_RS21730 - 4850655..4852409 (+) 1755 WP_261719124.1 hypothetical protein -
  N6J21_RS21735 - 4852413..4853264 (-) 852 WP_250754497.1 hypothetical protein -
  N6J21_RS21740 - 4853348..4854292 (+) 945 WP_093723501.1 Ppx/GppA phosphatase family protein -
  N6J21_RS21745 - 4854391..4855215 (+) 825 WP_093723502.1 sugar phosphate isomerase/epimerase -

Sequence

Protein


Download         Length: 469 a.a.        Molecular weight: 49737.92 Da        Isoelectric Point: 7.7380

>NTDB_id=633348 N6J21_RS21725 WP_093723498.1 4849061..4850470(-) (radA) [Streptomyces sp. FZ201]
MAARTKTAKERPSYRCTECGWQTAKWLGRCPECQAWGTIEEYGAPAVRTTAPGRVTTSALPIGQVDGRQATARPTGVPEL
DRVLGGGLVPGAVVLLAGEPGVGKSTLLLDVAAKSASDEHRTLYVTGEESASQVRLRADRINAIDDHLYLAAETDLAAVL
GHLDAVKPSLLILDSVQTVASPEIDGAPGGMAQVREVAGALIRASKERGMSTLLVGHVTKDGAIAGPRLLEHLVDVVLHF
EGDRHARLRLVRGVKNRYGATDEVGCFELHDEGITGLADPSGLFLTRRDEPVPGTCLTVTLEGRRPLVAEVQALTVDSQI
PSPRRTTSGLETSRVSMMLAVLEQRGRISALGKRDIYSATVGGVKLSEPAADLAIALALASAASDTPLPKNLVAIGEVGL
AGEVRRVTGVQRRLAEAHRLGFTHALVPGDPGKIPPGMKVLEVADIGDALRVLPRSRRREAPREAEDRR

Nucleotide


Download         Length: 1410 bp        

>NTDB_id=633348 N6J21_RS21725 WP_093723498.1 4849061..4850470(-) (radA) [Streptomyces sp. FZ201]
ATGGCTGCCCGTACGAAGACCGCCAAGGAGCGCCCGTCCTACCGCTGCACCGAGTGCGGCTGGCAGACGGCGAAATGGCT
CGGTCGCTGCCCCGAATGCCAGGCGTGGGGGACGATCGAGGAGTACGGCGCGCCCGCGGTCCGTACGACGGCGCCGGGGC
GTGTCACCACGTCCGCGCTGCCCATCGGGCAGGTCGACGGACGGCAGGCCACCGCCCGCCCCACCGGCGTGCCGGAGCTG
GACCGGGTCCTCGGCGGCGGTCTGGTGCCCGGCGCCGTGGTGCTGCTGGCGGGCGAGCCCGGCGTCGGCAAGTCGACGCT
GCTGCTGGACGTCGCCGCCAAGTCGGCCAGTGACGAACACCGCACCCTCTACGTCACCGGCGAGGAGTCGGCGAGCCAGG
TGCGGCTGCGCGCCGACCGCATCAACGCCATCGACGACCACCTGTATCTCGCGGCGGAGACGGATCTGGCGGCCGTGCTC
GGCCATTTGGACGCGGTCAAGCCCTCCCTGCTGATCCTGGACTCCGTGCAGACGGTCGCCTCCCCGGAGATCGACGGCGC
CCCCGGCGGCATGGCCCAGGTGCGGGAGGTCGCGGGCGCCCTCATCCGGGCCTCCAAGGAGCGCGGCATGTCCACGCTGC
TGGTGGGCCATGTCACCAAGGACGGCGCCATCGCGGGCCCGCGCCTGCTGGAGCACCTCGTCGACGTCGTCCTGCACTTC
GAGGGCGACCGGCACGCGCGCCTGCGCCTGGTGCGCGGCGTCAAGAACCGCTACGGCGCCACCGACGAGGTCGGCTGCTT
CGAACTGCACGACGAGGGCATCACGGGCCTGGCCGACCCGAGCGGACTTTTCCTGACACGGCGTGACGAACCGGTCCCCG
GCACCTGTCTGACGGTCACCCTGGAGGGCCGCCGTCCGCTGGTCGCCGAAGTGCAGGCGCTCACCGTCGACTCGCAGATC
CCCTCCCCGCGCCGCACCACCTCCGGCCTGGAGACCTCCCGGGTGTCGATGATGCTCGCCGTCCTGGAGCAGCGCGGCCG
GATCAGCGCCCTGGGCAAACGGGACATCTACTCCGCGACGGTCGGCGGCGTGAAGCTCTCCGAGCCCGCCGCGGACCTCG
CGATCGCCCTCGCGCTGGCCAGCGCGGCCAGCGACACCCCGCTGCCGAAGAACCTCGTCGCCATCGGCGAAGTGGGGCTC
GCGGGCGAGGTCAGACGGGTCACGGGCGTGCAGCGAAGGCTCGCCGAGGCGCACCGGCTGGGCTTCACGCACGCGCTCGT
ACCGGGGGATCCCGGCAAGATCCCGCCGGGCATGAAGGTGCTGGAAGTCGCGGACATAGGGGACGCGCTCCGGGTCCTTC
CCCGCTCGCGTCGCCGAGAGGCCCCACGGGAAGCGGAGGACCGCCGGTAG

Domains

Predicted by InterProScan.

Subunit ChlI of Mg-chelatase (ChlI)

(369-428)

AAA domain (AAA_25)

(78-222)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(14-41)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus mitis SK321

43.556

95.949

0.418
  radA Streptococcus mitis NCTC 12261

43.556

95.949

0.418
  radA/sms Bacillus subtilis subsp. subtilis str. 168

43.046

96.588

0.416
  radA Streptococcus pneumoniae TIGR4

43.111

95.949

0.414
  radA Streptococcus pneumoniae D39

43.111

95.949

0.414
  radA Streptococcus pneumoniae Rx1

43.111

95.949

0.414
  radA Streptococcus pneumoniae R6

43.111

95.949

0.414