Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   N6J21_RS20660 Genome accession   NZ_CP104794
Coordinates   4617375..4617974 (+) Length   199 a.a.
NCBI ID   WP_261719021.1    Uniprot ID   A0ABT7IS98
Organism   Streptomyces sp. FZ201     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4612375..4622974
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N6J21_RS20645 - 4613386..4615992 (+) 2607 WP_261719020.1 serine/threonine-protein kinase -
  N6J21_RS20650 - 4616001..4616711 (-) 711 WP_093721909.1 SLATT domain-containing protein -
  N6J21_RS20655 - 4616965..4617306 (+) 342 WP_093721910.1 YbaB/EbfC family nucleoid-associated protein -
  N6J21_RS20660 recR 4617375..4617974 (+) 600 WP_261719021.1 recombination mediator RecR Machinery gene
  N6J21_RS20665 - 4617967..4618629 (+) 663 WP_261719022.1 DUF5063 domain-containing protein -
  N6J21_RS20670 - 4618720..4619550 (+) 831 WP_261719023.1 helix-turn-helix transcriptional regulator -
  N6J21_RS20675 - 4619504..4619794 (+) 291 WP_093721914.1 DUF397 domain-containing protein -
  N6J21_RS20680 - 4620032..4621078 (+) 1047 WP_354431015.1 hypothetical protein -
  N6J21_RS20685 - 4621160..4621246 (-) 87 Protein_4082 Uma2 family endonuclease -
  N6J21_RS20690 - 4621520..4622797 (+) 1278 WP_093721916.1 aspartate kinase -

Sequence

Protein


Download         Length: 199 a.a.        Molecular weight: 21725.11 Da        Isoelectric Point: 4.9909

>NTDB_id=633342 N6J21_RS20660 WP_261719021.1 4617375..4617974(+) (recR) [Streptomyces sp. FZ201]
MYEGVVQDLIDELGRLPGVGPKSAQRIAFHILQAEPTDVRRLAQALMEVKAKVRFCATCGNVAQEELCGICRDVRRDASV
ICVVEEPKDVVAIERTREFRGRYHVLGGAISPIEGVGPDDLRIRELLARLADGTVTELILATDPNLEGEATATYLARMIK
PMGLKVTRLASGLPVGGDLEYADEVTLGRAFEGRRLLDV

Nucleotide


Download         Length: 600 bp        

>NTDB_id=633342 N6J21_RS20660 WP_261719021.1 4617375..4617974(+) (recR) [Streptomyces sp. FZ201]
TTGTACGAAGGCGTGGTCCAGGACCTGATCGACGAGCTGGGTCGGCTGCCCGGCGTCGGTCCCAAGAGCGCGCAGCGGAT
CGCCTTCCACATCCTCCAGGCGGAACCGACCGACGTACGGCGTCTCGCGCAGGCGCTGATGGAGGTCAAGGCGAAGGTCC
GCTTCTGCGCGACCTGCGGCAATGTCGCGCAGGAGGAGCTGTGCGGCATCTGCCGGGACGTACGCCGCGACGCGTCGGTG
ATCTGCGTAGTGGAGGAGCCCAAGGACGTGGTGGCCATCGAGCGCACCCGTGAGTTCCGGGGCCGCTACCACGTTCTGGG
CGGCGCGATCAGCCCCATCGAGGGCGTGGGCCCCGACGACCTGCGGATACGAGAACTGCTCGCCCGGCTGGCCGACGGGA
CGGTCACGGAGCTGATCCTGGCCACGGACCCGAATCTGGAAGGCGAGGCGACGGCCACCTACCTCGCCCGCATGATCAAG
CCCATGGGCCTCAAGGTCACCCGCCTGGCCAGCGGCCTCCCGGTGGGTGGCGACCTGGAATACGCGGACGAGGTCACTCT
CGGCCGCGCCTTCGAGGGGAGACGACTCCTAGATGTCTGA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(38-77)

Toprim domain (Toprim_4)

(79-170)

Helix-hairpin-helix motif (HHH)

(2-27)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Bacillus subtilis subsp. subtilis str. 168

55.612

98.492

0.548
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

53.608

97.487

0.523
  recR Streptococcus pneumoniae R6

46.392

97.487

0.452