Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK/comK1   Type   Regulator
Locus tag   LPC11_RS09000 Genome accession   NZ_CP088218
Coordinates   1853555..1854124 (-) Length   189 a.a.
NCBI ID   WP_002465629.1    Uniprot ID   A0A2J6P1Z9
Organism   Staphylococcus sp. HL28     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1848555..1859124
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LPC11_RS08970 (LPC11_08970) - 1849981..1850919 (+) 939 WP_023375035.1 1,4-dihydroxy-2-naphthoate polyprenyltransferase -
  LPC11_RS08975 (LPC11_08975) - 1850974..1851528 (-) 555 WP_023375034.1 GNAT family N-acetyltransferase -
  LPC11_RS08980 (LPC11_08980) - 1851732..1851944 (+) 213 WP_023375033.1 TM2 domain-containing protein -
  LPC11_RS12565 - 1852046..1852147 (+) 102 WP_019235857.1 SAR1012 family small protein -
  LPC11_RS08985 (LPC11_08985) - 1852371..1852727 (+) 357 WP_023375032.1 DoxX family protein -
  LPC11_RS09000 (LPC11_09000) comK/comK1 1853555..1854124 (-) 570 WP_002465629.1 competence protein ComK Regulator
  LPC11_RS09005 (LPC11_09005) - 1854343..1854561 (+) 219 WP_023375031.1 IDEAL domain-containing protein -
  LPC11_RS09010 (LPC11_09010) - 1854641..1855627 (-) 987 WP_023375030.1 lipoate--protein ligase -
  LPC11_RS09015 (LPC11_09015) - 1855832..1856017 (+) 186 WP_002450747.1 DUF2187 family protein -
  LPC11_RS09020 (LPC11_09020) - 1856023..1856625 (+) 603 WP_023375029.1 CPBP family glutamic-type intramembrane protease -
  LPC11_RS09025 (LPC11_09025) - 1856778..1858286 (-) 1509 WP_023375028.1 bifunctional UDP-sugar hydrolase/5'-nucleotidase -

Sequence

Protein


Download         Length: 189 a.a.        Molecular weight: 22438.69 Da        Isoelectric Point: 9.6661

>NTDB_id=633328 LPC11_RS09000 WP_002465629.1 1853555..1854124(-) (comK/comK1) [Staphylococcus sp. HL28]
MTTQNIYVIRKGDMVIRPNYDNQNQPNGSEIIRFDKTVIQSPFKVQKIIERSCKFYGNNYLSKKAETNRITGISSKPPIL
LTPLFPTYFFPTHSDRQEENLWINMHYVESIKELKHRKCKIIFANNETITLNVSFHSLWHQYTNAIFFYYMVDKQSRMKS
NDPDKPIDYEKSSLNIFEALSRYSLFVDK

Nucleotide


Download         Length: 570 bp        

>NTDB_id=633328 LPC11_RS09000 WP_002465629.1 1853555..1854124(-) (comK/comK1) [Staphylococcus sp. HL28]
ATGACAACTCAGAATATTTACGTAATTAGAAAGGGAGACATGGTGATTAGGCCTAATTATGATAATCAAAATCAACCAAA
TGGTTCAGAAATTATTCGGTTTGATAAGACAGTCATACAAAGCCCATTTAAAGTTCAAAAGATTATTGAGAGGTCATGTA
AATTTTATGGCAACAATTATTTAAGTAAAAAAGCTGAAACCAATCGAATTACAGGTATCTCTAGTAAACCACCCATTTTA
TTAACTCCTTTATTTCCAACTTACTTTTTTCCTACTCATTCAGACCGACAAGAAGAAAATTTATGGATTAACATGCATTA
TGTTGAATCTATAAAAGAATTAAAACATCGTAAATGTAAAATCATTTTTGCAAACAATGAAACCATTACCCTAAATGTAT
CTTTCCACAGTTTATGGCATCAGTATACGAATGCAATCTTCTTTTATTATATGGTAGATAAACAATCCCGTATGAAATCT
AATGACCCCGATAAACCTATCGATTATGAAAAATCCTCACTAAACATTTTTGAAGCATTATCACGTTATTCGCTATTTGT
AGATAAATAA

Domains

Predicted by InterproScan.

ComK protein (ComK)

(5-156)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2J6P1Z9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK/comK1 Staphylococcus aureus MW2

80.423

100

0.804
  comK/comK1 Staphylococcus aureus N315

80.423

100

0.804