Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   LPC11_RS04085 Genome accession   NZ_CP088218
Coordinates   850890..851273 (+) Length   127 a.a.
NCBI ID   WP_023373316.1    Uniprot ID   -
Organism   Staphylococcus sp. HL28     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 845890..856273
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LPC11_RS04055 (LPC11_04055) atpD 846135..847547 (+) 1413 WP_002451653.1 F0F1 ATP synthase subunit beta -
  LPC11_RS04060 (LPC11_04060) - 847567..847971 (+) 405 WP_002451652.1 F0F1 ATP synthase subunit epsilon -
  LPC11_RS04065 (LPC11_04065) - 848123..848356 (+) 234 WP_023373322.1 DUF1146 family protein -
  LPC11_RS04070 (LPC11_04070) murA 848468..849733 (+) 1266 WP_023373320.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  LPC11_RS04075 (LPC11_04075) fabZ 849777..850217 (+) 441 WP_002451649.1 3-hydroxyacyl-ACP dehydratase FabZ -
  LPC11_RS04080 (LPC11_04080) - 850263..850703 (-) 441 WP_023373318.1 YwpF-like family protein -
  LPC11_RS04085 (LPC11_04085) ssb 850890..851273 (+) 384 WP_023373316.1 single-stranded DNA-binding protein Machinery gene
  LPC11_RS04090 (LPC11_04090) - 851683..852414 (+) 732 WP_023373314.1 transglycosylase family protein -
  LPC11_RS04095 (LPC11_04095) tenA 852757..853446 (+) 690 WP_023373312.1 thiaminase II -
  LPC11_RS04100 (LPC11_04100) thiD 853439..854260 (+) 822 WP_023373310.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  LPC11_RS04105 (LPC11_04105) thiM 854253..855044 (+) 792 WP_023373308.1 hydroxyethylthiazole kinase -
  LPC11_RS04110 (LPC11_04110) thiE 855045..855686 (+) 642 WP_023373306.1 thiamine phosphate synthase -

Sequence

Protein


Download         Length: 127 a.a.        Molecular weight: 14526.47 Da        Isoelectric Point: 7.0817

>NTDB_id=633310 LPC11_RS04085 WP_023373316.1 850890..851273(+) (ssb) [Staphylococcus sp. HL28]
MLNKIVLVGRLTKDAQIFEKEEGSKIATFCVATERNYKDQNNEVACDYLYCKAFGKTAMNIEKYTSQGSLVGITGQMRSR
KYEKDNQTHFVTEVYVETIKFMSSKTKESNILSNELNEAQNECFHIG

Nucleotide


Download         Length: 384 bp        

>NTDB_id=633310 LPC11_RS04085 WP_023373316.1 850890..851273(+) (ssb) [Staphylococcus sp. HL28]
ATGTTAAATAAAATAGTTTTAGTTGGCAGACTTACAAAGGATGCCCAAATTTTTGAAAAGGAGGAAGGTAGTAAGATAGC
AACATTTTGTGTTGCTACGGAAAGAAATTATAAAGATCAGAACAATGAAGTCGCATGCGATTACCTATATTGTAAAGCCT
TTGGTAAAACAGCTATGAATATTGAAAAGTATACATCACAAGGTTCTTTAGTAGGTATTACAGGTCAAATGCGATCTCGT
AAATACGAAAAAGATAATCAGACACATTTTGTAACTGAAGTTTATGTAGAAACAATTAAATTTATGTCCTCTAAGACAAA
AGAATCCAATATCCTCTCTAACGAATTAAATGAAGCACAAAATGAATGCTTTCATATAGGTTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

77.586

91.339

0.709
  ssb Staphylococcus aureus MW2

76.724

91.339

0.701