Detailed information    

insolico Bioinformatically predicted

Overview

Name   braR   Type   Regulator
Locus tag   LPC11_RS01280 Genome accession   NZ_CP088218
Coordinates   283475..284140 (+) Length   221 a.a.
NCBI ID   WP_107566263.1    Uniprot ID   A0A6N6V808
Organism   Staphylococcus sp. HL28     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 278475..289140
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LPC11_RS01255 (LPC11_01255) - 279044..279493 (+) 450 WP_023374230.1 helix-turn-helix domain-containing protein -
  LPC11_RS01260 (LPC11_01260) - 279749..281221 (+) 1473 WP_114599525.1 poly-gamma-glutamate hydrolase family protein -
  LPC11_RS01265 (LPC11_01265) - 281401..281502 (+) 102 WP_015364644.1 SE2200 family small protein -
  LPC11_RS01270 (LPC11_01270) - 281585..283039 (-) 1455 WP_023374228.1 alkaline phosphatase -
  LPC11_RS01275 (LPC11_01275) - 283295..283453 (+) 159 WP_164967141.1 hypothetical protein -
  LPC11_RS01280 (LPC11_01280) braR 283475..284140 (+) 666 WP_107566263.1 response regulator transcription factor Regulator
  LPC11_RS01285 (LPC11_01285) braS 284146..285042 (+) 897 WP_023374225.1 sensor histidine kinase Regulator
  LPC11_RS01290 (LPC11_01290) - 285146..285892 (+) 747 WP_023374224.1 ABC transporter ATP-binding protein -
  LPC11_RS01295 (LPC11_01295) - 285910..287904 (+) 1995 WP_231307311.1 ABC transporter permease -
  LPC11_RS01300 (LPC11_01300) - 288027..288869 (+) 843 WP_023374222.1 DUF4064 domain-containing protein -

Sequence

Protein


Download         Length: 221 a.a.        Molecular weight: 25417.46 Da        Isoelectric Point: 5.1410

>NTDB_id=633305 LPC11_RS01280 WP_107566263.1 283475..284140(+) (braR) [Staphylococcus sp. HL28]
MKIYIVEDDLVIAESLASELKKWNYDVKMAKQFSHVLDDFKGYLPDLVLLDINLPTLNGFHWCQEMRKISNVPIIFISSR
TDNMDQIMAIQMGGDDFIEKPFNLSLTVAKVQALLRRTYDLAVSNNELNVKGCKLIVDEAKLIFQDDATQLSLTELQIAK
LLFQNEGKFVNRTALIEKCWESENYIDDNTLAVNMTRLRKKLSQIGLTDFIETKKNVGYRV

Nucleotide


Download         Length: 666 bp        

>NTDB_id=633305 LPC11_RS01280 WP_107566263.1 283475..284140(+) (braR) [Staphylococcus sp. HL28]
ATGAAGATTTATATAGTAGAAGATGACTTAGTCATTGCAGAAAGTTTAGCAAGTGAACTTAAGAAATGGAACTATGACGT
TAAGATGGCAAAACAATTTTCGCATGTTTTAGATGATTTCAAAGGCTATCTACCTGACTTAGTACTACTAGATATTAATT
TACCTACTTTAAATGGATTCCATTGGTGCCAAGAAATGAGAAAAATCTCGAACGTACCTATTATATTTATTAGTTCAAGG
ACAGATAATATGGACCAAATTATGGCGATTCAAATGGGTGGCGATGATTTTATTGAGAAACCATTCAATTTATCATTAAC
AGTTGCTAAAGTACAAGCTTTATTACGACGAACTTATGATTTAGCTGTATCTAACAACGAATTAAATGTTAAAGGATGTA
AACTTATCGTTGATGAGGCTAAATTAATATTTCAAGATGATGCGACACAACTATCTTTAACAGAACTTCAAATCGCTAAA
TTGTTGTTTCAAAATGAAGGTAAATTTGTAAATCGAACAGCTTTAATTGAAAAATGTTGGGAATCAGAGAATTATATTGA
TGATAATACTTTGGCGGTAAATATGACACGATTGCGAAAAAAATTAAGTCAAATTGGCTTAACAGATTTTATTGAAACGA
AGAAAAATGTGGGTTATAGGGTGTAA

Domains

Predicted by InterproScan.

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(149-220)

Response regulator receiver domain (Response_reg)

(3-111)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6N6V808

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  braR Staphylococcus aureus N315

78.733

100

0.787