Detailed information    

insolico Bioinformatically predicted

Overview

Name   eeP   Type   Regulator
Locus tag   LQ052_RS08400 Genome accession   NZ_CP088203
Coordinates   1834306..1835574 (-) Length   422 a.a.
NCBI ID   WP_005875929.1    Uniprot ID   -
Organism   Enterococcus durans strain S8-3     
Function   processing of ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 1829306..1840574
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LQ052_RS08395 (LQ052_08395) - 1832535..1834238 (-) 1704 WP_005875927.1 proline--tRNA ligase -
  LQ052_RS08400 (LQ052_08400) eeP 1834306..1835574 (-) 1269 WP_005875929.1 RIP metalloprotease RseP Regulator
  LQ052_RS08405 (LQ052_08405) - 1835821..1836621 (-) 801 WP_005875931.1 phosphatidate cytidylyltransferase -
  LQ052_RS08410 (LQ052_08410) - 1836618..1837427 (-) 810 WP_005875933.1 isoprenyl transferase -
  LQ052_RS08415 (LQ052_08415) frr 1837773..1838330 (-) 558 WP_005875935.1 ribosome recycling factor -
  LQ052_RS08420 (LQ052_08420) pyrH 1838333..1839055 (-) 723 WP_005875937.1 UMP kinase -
  LQ052_RS08425 (LQ052_08425) tsf 1839277..1840158 (-) 882 WP_081134988.1 translation elongation factor Ts -

Sequence

Protein


Download         Length: 422 a.a.        Molecular weight: 45924.40 Da        Isoelectric Point: 5.0165

>NTDB_id=633283 LQ052_RS08400 WP_005875929.1 1834306..1835574(-) (eeP) [Enterococcus durans strain S8-3]
MKTIITFIIVFGILVIVHEFGHFFFAKRSGILVREFAIGMGPKIYGHQAKDGTTYTLRLLPIGGYVRMAGNGDDETEMAP
GMPLSLLLNSDGIVEKINVSKKVQLPNGIPLELIAYDLEDDLTITGYVNGDETQEVTYHVEHDASIIEADGTEIRIAPRD
VQFQSAKLWQRMLTNFAGPMNNFILAILLFIILAFMQGGVQVTDTNQIGKVLPNGAAAAAGLKENDEIVSIDGKSVHSWN
DLTSEITENPGKKLDVEVRRDGKTQQLDVTPKAVEANGKEVGQLGIQAPMKTGFLDKIVGGARRAFSSSMEIFKALGSLF
TGFSLDKLGGPVMMFQLSSEAANQGVMTVISLMALLSMNLGIVNLLPIPALDGGKIVLNIFEGVRGKPLSQEKEGFITLA
GFGLLMLLMVLVTWNDIQRFFF

Nucleotide


Download         Length: 1269 bp        

>NTDB_id=633283 LQ052_RS08400 WP_005875929.1 1834306..1835574(-) (eeP) [Enterococcus durans strain S8-3]
ATGAAAACAATTATCACATTTATTATTGTCTTCGGTATTTTGGTCATTGTACATGAGTTTGGACATTTCTTCTTTGCGAA
ACGATCAGGAATTCTCGTTCGTGAGTTTGCTATTGGAATGGGTCCGAAAATCTATGGACACCAAGCAAAGGACGGAACTA
CCTATACATTGCGTTTATTGCCGATCGGCGGTTATGTGAGAATGGCAGGAAACGGAGACGATGAAACAGAAATGGCCCCT
GGAATGCCGTTATCTCTTTTGTTAAATTCTGATGGTATCGTGGAGAAAATCAATGTAAGCAAAAAAGTGCAACTGCCCAA
TGGGATTCCATTAGAATTGATCGCATACGATCTTGAAGACGACTTAACGATCACAGGTTATGTGAATGGAGATGAAACAC
AGGAAGTCACCTATCACGTCGAACACGATGCGTCCATCATTGAAGCGGACGGTACAGAGATCCGAATTGCGCCTAGAGAT
GTTCAATTCCAGTCAGCGAAATTATGGCAACGGATGCTGACTAATTTCGCTGGGCCGATGAATAATTTTATTTTAGCGAT
CCTGTTGTTCATTATCCTTGCGTTCATGCAAGGTGGCGTGCAAGTAACGGATACCAATCAAATTGGAAAAGTCTTGCCGA
ATGGCGCAGCCGCAGCTGCTGGGTTGAAAGAAAATGATGAAATAGTATCGATTGATGGCAAGTCTGTTCATTCATGGAAC
GATTTGACGTCAGAGATCACCGAAAATCCTGGAAAAAAATTAGATGTTGAAGTAAGACGTGACGGCAAAACACAGCAGCT
TGACGTAACACCGAAAGCAGTTGAAGCCAATGGGAAAGAAGTCGGCCAACTAGGGATTCAAGCACCAATGAAGACTGGCT
TTTTGGATAAAATAGTTGGTGGAGCCCGTCGAGCATTCAGTAGTTCAATGGAGATATTCAAAGCGTTAGGCTCATTGTTC
ACAGGCTTTAGCTTAGATAAATTAGGTGGACCCGTGATGATGTTCCAGCTTTCTTCTGAAGCTGCTAATCAAGGTGTGAT
GACTGTCATTAGCTTGATGGCCCTGCTTTCTATGAATCTAGGAATCGTTAATTTACTGCCGATTCCTGCATTAGATGGTG
GGAAAATCGTCTTGAACATCTTTGAAGGTGTGAGAGGAAAACCTCTCAGTCAAGAAAAAGAAGGCTTTATCACTTTGGCA
GGATTTGGGTTATTGATGCTATTGATGGTATTGGTCACTTGGAATGATATTCAACGATTCTTTTTCTAA

Domains

Predicted by InterproScan.

Peptidase family M50 (Peptidase_M50)

(6-408)

PDZ domain (PDZ_2)

(199-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  eeP Streptococcus thermophilus LMD-9

55.607

100

0.564
  eeP Streptococcus thermophilus LMG 18311

55.374

100

0.562