Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   LRM91_RS17165 Genome accession   NZ_CP088136
Coordinates   3544883..3545488 (-) Length   201 a.a.
NCBI ID   WP_001202375.1    Uniprot ID   A0A5I0N148
Organism   Salmonella enterica subsp. enterica serovar Typhimurium strain SCPM-O-B-4515     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3539883..3550488
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LRM91_RS17150 (LRM91_17150) helD 3540100..3542154 (-) 2055 WP_000420505.1 DNA helicase IV -
  LRM91_RS17155 (LRM91_17155) - 3542278..3542724 (+) 447 WP_249895113.1 YccF domain-containing protein -
  LRM91_RS17160 (LRM91_17160) yccS 3542743..3544896 (+) 2154 WP_249895114.1 YccS family putative transporter -
  LRM91_RS17165 (LRM91_17165) sxy/tfoX 3544883..3545488 (-) 606 WP_001202375.1 TfoX/Sxy family DNA transformation protein Regulator
  LRM91_RS17170 (LRM91_17170) sulA 3545705..3546214 (+) 510 WP_249895115.1 SOS-induced cell division inhibitor SulA -
  LRM91_RS17175 (LRM91_17175) ompA 3546571..3547623 (+) 1053 WP_001674965.1 porin OmpA -
  LRM91_RS17180 (LRM91_17180) matP 3547695..3548147 (-) 453 WP_000877172.1 macrodomain Ter protein MatP -
  LRM91_RS17185 (LRM91_17185) - 3548333..3550093 (+) 1761 WP_000156448.1 Lon protease family protein -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 23174.94 Da        Isoelectric Point: 8.7403

>NTDB_id=632843 LRM91_RS17165 WP_001202375.1 3544883..3545488(-) (sxy/tfoX) [Salmonella enterica subsp. enterica serovar Typhimurium strain SCPM-O-B-4515]
MRALSYDRIYKSQEYLASLGTIQYRSLFGSYSLTVEDTVFAMVANGELYLRACEESVPYCVKHPPAWLMFMKCGRPVMLN
YYRVDESLWRDQQQLVRLSKYSLDAAMKEKHSRILQHRLKDLPNMTFHLETLLNESGIKDENMLRILGAKMCWLRLRQSN
PLLTVKVLYALEGAIVGVHEAALPASRRQELADWAHSLTAG

Nucleotide


Download         Length: 606 bp        

>NTDB_id=632843 LRM91_RS17165 WP_001202375.1 3544883..3545488(-) (sxy/tfoX) [Salmonella enterica subsp. enterica serovar Typhimurium strain SCPM-O-B-4515]
ATGAGAGCACTCTCTTATGACAGGATCTATAAATCGCAAGAATATTTGGCCTCTTTGGGGACGATCCAGTATCGATCTTT
ATTCGGTAGCTATAGTCTGACCGTGGAGGATACCGTCTTTGCGATGGTGGCTAATGGCGAGCTTTATCTCCGCGCCTGTG
AAGAAAGCGTACCCTACTGTGTGAAGCATCCCCCCGCCTGGCTCATGTTTATGAAATGTGGACGTCCCGTTATGCTCAAC
TATTACCGGGTGGATGAAAGCCTGTGGCGCGATCAGCAGCAGCTGGTACGTTTATCGAAGTATTCTCTTGACGCGGCAAT
GAAGGAAAAACACAGCCGTATTTTACAGCACAGACTCAAAGATCTTCCCAATATGACCTTCCATCTGGAAACATTGCTCA
ATGAGTCAGGGATAAAGGACGAAAATATGTTACGCATACTGGGCGCGAAAATGTGCTGGCTAAGGTTGCGACAAAGCAAT
CCCTTGCTGACGGTGAAAGTTTTGTATGCCCTGGAAGGCGCAATTGTCGGCGTACATGAAGCGGCGCTCCCGGCGAGTCG
TCGCCAGGAGCTTGCCGACTGGGCTCATTCGCTTACGGCTGGGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5I0N148

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

75.879

99.005

0.751