Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilG   Type   Regulator
Locus tag   LRM40_RS13820 Genome accession   NZ_CP088081
Coordinates   2977922..2978326 (-) Length   134 a.a.
NCBI ID   WP_022978844.1    Uniprot ID   -
Organism   Ideonella dechloratans strain CCUG 30977     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 2972922..2983326
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LRM40_RS13805 (LRM40_13805) - 2974584..2976908 (-) 2325 WP_151121997.1 methyl-accepting chemotaxis protein -
  LRM40_RS13810 (LRM40_13810) - 2976954..2977475 (-) 522 WP_151121998.1 chemotaxis protein CheW -
  LRM40_RS13815 (LRM40_13815) - 2977486..2977851 (-) 366 WP_151121999.1 PleD family two-component system response regulator -
  LRM40_RS13820 (LRM40_13820) pilG 2977922..2978326 (-) 405 WP_022978844.1 PleD family two-component system response regulator Regulator
  LRM40_RS13825 (LRM40_13825) - 2978404..2978556 (-) 153 WP_022978843.1 rubredoxin -
  LRM40_RS13830 (LRM40_13830) - 2978737..2979714 (+) 978 WP_375138542.1 hydroxymethylpyrimidine/phosphomethylpyrimidine kinase -
  LRM40_RS13835 (LRM40_13835) hemL 2979671..2980996 (+) 1326 WP_151122000.1 glutamate-1-semialdehyde 2,1-aminomutase -
  LRM40_RS13840 (LRM40_13840) - 2980993..2981832 (+) 840 WP_151122001.1 D-hexose-6-phosphate mutarotase -
  LRM40_RS13845 (LRM40_13845) mpl 2981883..2983259 (+) 1377 WP_151122002.1 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase -

Sequence

Protein


Download         Length: 134 a.a.        Molecular weight: 14996.30 Da        Isoelectric Point: 6.9518

>NTDB_id=632603 LRM40_RS13820 WP_022978844.1 2977922..2978326(-) (pilG) [Ideonella dechloratans strain CCUG 30977]
MGLTQTASPTTRVLVIDDSNTIRRSAEIFLRQGGYEVILAEDGFDALAKVNDFEPDLIFCDILMPRLDGYQTCAIIKRNP
RFAQVPVIMLSSKDGVFDKARGRMVGSDDYLTKPFTKDQLLQAVAHFRALAVQR

Nucleotide


Download         Length: 405 bp        

>NTDB_id=632603 LRM40_RS13820 WP_022978844.1 2977922..2978326(-) (pilG) [Ideonella dechloratans strain CCUG 30977]
TTGGGTCTGACGCAAACTGCGTCGCCAACCACCCGGGTGCTGGTGATTGACGACAGCAACACCATCCGGCGCAGTGCAGA
AATCTTTCTGCGCCAAGGTGGTTACGAAGTGATACTGGCCGAAGATGGTTTCGACGCCTTGGCCAAGGTCAATGATTTCG
AACCGGACCTCATCTTCTGCGACATCCTGATGCCGCGGCTCGATGGCTACCAGACCTGCGCCATCATCAAGCGCAATCCC
CGGTTTGCCCAGGTGCCGGTGATCATGCTGTCTTCCAAGGACGGCGTGTTCGACAAGGCTCGTGGCCGCATGGTCGGTTC
CGACGATTACCTGACCAAGCCTTTCACCAAGGACCAGTTGCTGCAGGCGGTGGCGCACTTCCGTGCGCTGGCCGTGCAGC
GGTGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(13-124)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Acinetobacter baumannii strain A118

63.717

84.328

0.537
  vicR Streptococcus mutans UA159

42.373

88.06

0.373