Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL/pilP   Type   Machinery gene
Locus tag   N5P33_RS25440 Genome accession   NZ_CP104720
Coordinates   5484936..5485460 (-) Length   174 a.a.
NCBI ID   WP_003095836.1    Uniprot ID   G3XCX7
Organism   Pseudomonas aeruginosa strain NY4593     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5479936..5490460
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N5P33_RS25425 (N5P33_25425) aroB 5481052..5482158 (-) 1107 WP_028681386.1 3-dehydroquinate synthase -
  N5P33_RS25430 (N5P33_25430) aroK 5482208..5482726 (-) 519 WP_003095833.1 shikimate kinase AroK -
  N5P33_RS25435 (N5P33_25435) pilQ 5482738..5484882 (-) 2145 WP_261734948.1 type 4a pilus secretin PilQ Machinery gene
  N5P33_RS25440 (N5P33_25440) comL/pilP 5484936..5485460 (-) 525 WP_003095836.1 type 4a pilus biogenesis lipoprotein PilP Machinery gene
  N5P33_RS25445 (N5P33_25445) pilO 5485457..5486080 (-) 624 WP_003103268.1 type 4a pilus biogenesis protein PilO Machinery gene
  N5P33_RS25450 (N5P33_25450) pilN 5486077..5486673 (-) 597 WP_003095839.1 type 4a pilus biogenesis protein PilN Machinery gene
  N5P33_RS25455 (N5P33_25455) pilM 5486673..5487737 (-) 1065 WP_003110888.1 type IV pilus assembly protein PilM Machinery gene
  N5P33_RS25460 (N5P33_25460) - 5487922..5490393 (+) 2472 WP_023089702.1 penicillin-binding protein 1A -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 19053.84 Da        Isoelectric Point: 9.4114

>NTDB_id=632497 N5P33_RS25440 WP_003095836.1 5484936..5485460(-) (comL/pilP) [Pseudomonas aeruginosa strain NY4593]
MRARLILSSLLLASLAGCGGGSDFADLQSYMDEVRARPKGTIEPLPKFQPYEAFTYSAASLRSPFQPPVKIDLTVRQKGN
KVIKPDETRVKQFLEGFNIETFEMVGTLSNAQGTFALVKGAGGVHRVRVGDYLGRNDGKVVGISEGKIDVIEIVPDGEGN
WLERPRSLTLKERS

Nucleotide


Download         Length: 525 bp        

>NTDB_id=632497 N5P33_RS25440 WP_003095836.1 5484936..5485460(-) (comL/pilP) [Pseudomonas aeruginosa strain NY4593]
ATGAGAGCCCGCCTGATTCTGAGCAGCCTGCTGCTCGCCAGCCTGGCCGGATGCGGCGGCGGTTCCGATTTCGCCGATCT
GCAGTCCTACATGGACGAGGTTCGCGCCCGGCCCAAGGGCACCATCGAGCCGTTGCCGAAGTTCCAGCCGTACGAGGCCT
TCACCTATAGCGCCGCGTCGCTACGCAGCCCGTTCCAGCCGCCGGTGAAGATCGACCTGACCGTGCGGCAGAAGGGCAAC
AAGGTGATCAAGCCCGACGAGACGCGGGTCAAGCAGTTCCTGGAAGGCTTCAACATCGAGACCTTCGAGATGGTCGGCAC
CCTGTCCAACGCCCAGGGCACCTTCGCCCTGGTGAAGGGCGCGGGTGGCGTGCACCGGGTGAGGGTCGGGGACTACCTGG
GGCGCAACGACGGCAAGGTCGTCGGCATCAGCGAAGGAAAAATAGACGTGATCGAAATCGTTCCTGACGGAGAGGGGAAC
TGGCTGGAGCGTCCGCGCAGCCTGACTCTCAAGGAACGCTCCTGA

Domains

Predicted by InterProScan.

Pilus assembly protein, PilP (PilP)

(26-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 2Y4X
  PDB 2Y4Y

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL/pilP Acinetobacter baylyi ADP1

36.416

99.425

0.362