Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   N149_RS05575 Genome accession   NC_022660
Coordinates   1119170..1119940 (-) Length   256 a.a.
NCBI ID   WP_002818781.1    Uniprot ID   A0A622RR74
Organism   Campylobacter coli 15-537360     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1114170..1124940
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N149_RS05545 (N149_0610) aspS 1114306..1116057 (+) 1752 WP_023361840.1 aspartate--tRNA ligase -
  N149_RS05550 (N149_0609) - 1116054..1116629 (+) 576 WP_002781658.1 adenylate kinase -
  N149_RS05555 (N149_0608) ppa 1116639..1117157 (+) 519 WP_002776378.1 inorganic diphosphatase -
  N149_RS05560 (N149_0607) msrA 1117205..1117705 (+) 501 WP_023361838.1 peptide-methionine (S)-S-oxide reductase MsrA -
  N149_RS05565 (N149_0606) - 1117928..1118782 (-) 855 WP_370323062.1 RsmB/NOP family class I SAM-dependent RNA methyltransferase -
  N149_RS05570 (N149_0605) ruvX 1118793..1119173 (-) 381 WP_002776373.1 Holliday junction resolvase RuvX -
  N149_RS05575 (N149_0604) dprA 1119170..1119940 (-) 771 WP_002818781.1 DNA-processing protein DprA Machinery gene
  N149_RS05580 (N149_0603) - 1119930..1120961 (-) 1032 WP_002820415.1 divergent polysaccharide deacetylase family protein -
  N149_RS05585 (N149_0602) ilvC 1120964..1121986 (-) 1023 WP_002776360.1 ketol-acid reductoisomerase -
  N149_RS05590 (N149_0601) - 1122109..1124043 (+) 1935 WP_023361836.1 RNB domain-containing ribonuclease -

Sequence

Protein


Download         Length: 256 a.a.        Molecular weight: 28817.22 Da        Isoelectric Point: 5.0727

>NTDB_id=63248 N149_RS05575 WP_002818781.1 1119170..1119940(-) (dprA) [Campylobacter coli 15-537360]
MQSEIPSAYLELFKELKNPPKKLYYKGNLKLLEQRKIAIIGSRRMSTYTKNCVFELSNLLKNSKISVVSGGALGVDISAS
MAAMPSTIGVFANGLDEIYPRSNEKIIKQIYENALALSENESYYKPKPYDFLLRNRLIVALSEAVVVAQADLQSGSMQSA
RLALELNKPLYVLPQRKNESDGTNLLLQEKNANLLLDFKEFASCFGVIEEEKDEFLDFCRQGVSVDEATQIYGEKVYEYE
LEGKISIEGLFIRVLV

Nucleotide


Download         Length: 771 bp        

>NTDB_id=63248 N149_RS05575 WP_002818781.1 1119170..1119940(-) (dprA) [Campylobacter coli 15-537360]
ATGCAAAGTGAAATACCAAGCGCTTATCTAGAGCTTTTTAAAGAGTTGAAAAATCCTCCTAAAAAACTTTATTATAAAGG
AAATTTAAAACTCTTAGAACAAAGAAAGATAGCCATTATAGGCTCTAGGCGTATGAGCACTTACACTAAAAATTGCGTTT
TTGAGCTTTCAAATTTGCTTAAAAATTCAAAGATAAGTGTTGTAAGCGGAGGTGCTTTGGGTGTTGATATTAGTGCAAGT
ATGGCGGCTATGCCAAGCACTATAGGGGTTTTTGCCAATGGTCTTGATGAAATTTATCCTAGAAGCAATGAAAAAATTAT
AAAACAAATTTATGAAAATGCTTTGGCTTTAAGCGAAAACGAATCCTACTATAAGCCTAAGCCTTATGATTTTTTACTTA
GAAATAGGCTGATTGTCGCTTTGAGTGAAGCCGTTGTTGTTGCGCAAGCAGATTTGCAAAGCGGCTCCATGCAAAGTGCA
AGACTTGCTTTGGAGCTTAATAAACCTTTATATGTTTTACCCCAACGCAAAAATGAAAGCGATGGGACAAATTTACTCTT
ACAAGAAAAAAATGCGAATTTGCTTTTAGATTTTAAAGAATTTGCAAGTTGTTTTGGGGTTATAGAAGAAGAAAAGGATG
AATTTTTAGACTTTTGTAGACAGGGCGTAAGCGTGGATGAGGCAACTCAAATTTATGGAGAAAAAGTCTATGAGTACGAG
CTTGAAGGAAAAATTTCCATAGAAGGTCTTTTTATAAGGGTTTTGGTATGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(8-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A622RR74

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

76.562

100

0.766
  dprA Helicobacter pylori 26695

47.581

96.875

0.461

Multiple sequence alignment