Detailed information    

insolico Bioinformatically predicted

Overview

Name   letA   Type   Regulator
Locus tag   N5914_RS09905 Genome accession   NZ_CP104665
Coordinates   2107068..2107724 (+) Length   218 a.a.
NCBI ID   WP_022645829.1    Uniprot ID   -
Organism   Escherichia coli strain 2021CK-00607     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 2102068..2112724
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N5914_RS09875 (N5914_09880) dcyD 2102948..2103934 (+) 987 WP_022645830.1 D-cysteine desulfhydrase -
  N5914_RS09880 (N5914_09885) tcyL 2103949..2104617 (+) 669 WP_001158220.1 cystine ABC transporter permease -
  N5914_RS09885 (N5914_09890) tcyN 2104614..2105366 (+) 753 WP_001272994.1 L-cystine ABC transporter ATP-binding protein TcyN -
  N5914_RS09890 (N5914_09895) sdiA 2105596..2106318 (+) 723 WP_001154255.1 transcriptional regulator SdiA -
  N5914_RS09895 (N5914_09900) yecF 2106385..2106609 (-) 225 WP_000106474.1 DUF2594 family protein YecF -
  N5914_RS09900 (N5914_09905) yecU 2106596..2106772 (-) 177 WP_001307856.1 protein YecU -
  N5914_RS09905 (N5914_09910) letA 2107068..2107724 (+) 657 WP_022645829.1 UvrY/SirA/GacA family response regulator transcription factor Regulator
  N5914_RS09910 (N5914_09915) uvrC 2107721..2109553 (+) 1833 WP_001283421.1 excinuclease ABC subunit UvrC Machinery gene
  N5914_RS09915 (N5914_09920) pgsA 2109610..2110158 (+) 549 WP_001160187.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  N5914_RS09935 (N5914_09940) - 2110856..2111497 (-) 642 Protein_1947 hypothetical protein -
  N5914_RS09940 (N5914_09945) - 2111570..2112658 (+) 1089 Protein_1948 IS3 family transposase -

Sequence

Protein


Download         Length: 218 a.a.        Molecular weight: 23938.73 Da        Isoelectric Point: 6.9612

>NTDB_id=632290 N5914_RS09905 WP_022645829.1 2107068..2107724(+) (letA) [Escherichia coli strain 2021CK-00607]
MINVLLVDDHELVRAGIRRILEDIKGIKVVGEASCGEDAVKWCRANAVDVVLMDMSMPGIGGLEATRKIARSTADVKIIM
LTVHTENPLPAKVMQAGAAGYLSKGAAPQEVVSAIRSVYSGQRYIAYDIAQQMALSQIEPEKTESPFASLSERELQIMLM
ITKGQKVNEISEQLNLSPKTVNSYRYRMFSKLNIHGDVELTHLAIRHGLCNAETLSSQ

Nucleotide


Download         Length: 657 bp        

>NTDB_id=632290 N5914_RS09905 WP_022645829.1 2107068..2107724(+) (letA) [Escherichia coli strain 2021CK-00607]
TTGATCAACGTTCTACTTGTTGATGACCACGAACTGGTGCGCGCAGGGATACGACGCATTCTGGAAGATATAAAGGGTAT
AAAAGTCGTCGGTGAGGCATCGTGCGGTGAAGACGCCGTTAAGTGGTGCCGGGCAAATGCCGTTGACGTGGTGCTAATGG
ACATGAGTATGCCGGGCATTGGCGGTCTTGAGGCGACGCGTAAAATCGCGCGTTCCACAGCTGATGTCAAAATCATCATG
CTTACTGTCCATACAGAAAACCCTTTACCAGCGAAAGTCATGCAGGCCGGTGCTGCGGGCTACCTCAGCAAAGGCGCGGC
TCCGCAGGAAGTCGTGAGTGCGATCCGTTCTGTCTATTCAGGGCAGCGTTACATTGCTTATGACATCGCTCAACAAATGG
CGTTAAGCCAGATCGAACCAGAAAAAACAGAAAGCCCATTTGCCAGTTTGTCTGAACGTGAATTGCAGATTATGCTGATG
ATCACCAAGGGCCAGAAGGTCAATGAGATCTCAGAACAGCTCAATCTCAGTCCGAAAACGGTGAACAGCTACCGCTATCG
TATGTTCAGTAAACTAAACATTCATGGCGATGTTGAGCTGACTCACCTGGCAATTCGCCATGGTCTGTGTAATGCGGAGA
CATTATCAAGTCAGTGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(149-204)

Response regulator receiver domain (Response_reg)

(4-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  letA Legionella pneumophila str. Paris

50.725

94.954

0.482
  letA Legionella pneumophila strain ERS1305867

50.725

94.954

0.482