Detailed information    

insolico Bioinformatically predicted

Overview

Name   ccrB   Type   Machinery gene
Locus tag   LQF30_RS11780 Genome accession   NZ_CP088002
Coordinates   2454975..2456603 (+) Length   542 a.a.
NCBI ID   WP_263926382.1    Uniprot ID   -
Organism   Staphylococcus epidermidis strain IVK83     
Function   promote SCCmec transfer (predicted from homology)   
Homologous recombination

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
SCCmec 2446258..2456603 2454975..2456603 within 0


Gene organization within MGE regions


Location: 2446258..2456603
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LQF30_RS11740 (LQF30_11700) - 2446258..2446755 (-) 498 WP_258500373.1 hypothetical protein -
  LQF30_RS11745 (LQF30_11705) - 2447132..2447257 (-) 126 WP_258500372.1 FRG domain-containing protein -
  LQF30_RS11750 (LQF30_11710) - 2447725..2448102 (-) 378 WP_258500371.1 hypothetical protein -
  LQF30_RS11755 (LQF30_11715) - 2448528..2449460 (-) 933 WP_000364405.1 hypothetical protein -
  LQF30_RS11760 (LQF30_11720) - 2449532..2451115 (-) 1584 WP_258500369.1 hypothetical protein -
  LQF30_RS11765 (LQF30_11725) ssb 2451287..2451583 (+) 297 WP_000221968.1 cassette chromosome ssDNA-binding protein -
  LQF30_RS11770 (LQF30_11730) cch1 2451583..2453370 (+) 1788 WP_258500368.1 cassette chromosome replicative helicase -
  LQF30_RS11775 (LQF30_11735) ccrA 2453604..2454953 (+) 1350 WP_258500367.1 cassette chromosome recombinase CcrA Machinery gene
  LQF30_RS11780 (LQF30_11740) ccrB 2454975..2456603 (+) 1629 WP_263926382.1 cassette chromosome recombinase CcrB Machinery gene

Sequence

Protein


Download         Length: 542 a.a.        Molecular weight: 62710.97 Da        Isoelectric Point: 10.0137

>NTDB_id=632280 LQF30_RS11780 WP_263926382.1 2454975..2456603(+) (ccrB) [Staphylococcus epidermidis strain IVK83]
MQQFKTKRVGIYVRVSTEMQSIEGFSIDGQINQIKEYCEFHHFEVKDIYADRGISGKSMNRPELQRMLKDAKEGYIDCVM
VYKTNRLARNTSDLLKIVEDLHKQNVEFFSLSERMEVNTSSGKLMLQILASFSEFERNNIVENVFMGQTRRAQEGYYQGN
LPLGYDKIPNSKHELMINQHEANIVKYIFESYAKGHGYRKIANALNHKGYVTKKGKPFSISSITYILANPFYIGKIQFAK
YKDWSEKRRKGLNDKPVIAEGKHSPIINQDLWNKVQIRKKQVSQKPQVHGKGTNLLTGIIHCPQCGAPMAASNTTNTLKD
GTKKRIRYYSCSNFRNKGSKVCSANSVRADVIEDYVMKQILEIVKSDKVIERVVARVNQENKVDGAALHHDIAYKQQQYD
EVQTKLNNLIKTIEDNPDLTSVIRPSIQKYEKQLNDITNQINQLKNQQNEDKSLFDAKQISKLLQHIFQDIKHMEKSRLK
ALYLSVIDRINIRKDGNHKKQFYVTLKLNNEIIKQLFNNKQLDEVHLSTSSLFLPQTLYLTI

Nucleotide


Download         Length: 1629 bp        

>NTDB_id=632280 LQF30_RS11780 WP_263926382.1 2454975..2456603(+) (ccrB) [Staphylococcus epidermidis strain IVK83]
ATGCAACAATTTAAAACAAAACGTGTCGGTATCTATGTACGTGTATCAACAGAAATGCAAAGCATAGAAGGATTTAGTAT
CGACGGACAAATTAATCAGATTAAAGAATATTGTGAGTTCCATCATTTTGAAGTCAAAGATATCTATGCCGACCGTGGTA
TTTCAGGTAAATCTATGAATCGACCTGAGCTCCAACGTATGTTGAAGGATGCGAAAGAAGGCTATATCGACTGTGTTATG
GTCTACAAAACAAACCGATTAGCTCGTAATACATCTGATCTTCTCAAAATTGTCGAAGATTTACACAAACAAAATGTCGA
ATTTTTCAGTTTATCAGAGCGTATGGAAGTCAATACTTCTTCTGGTAAACTCATGTTACAAATACTTGCGAGTTTCTCAG
AATTCGAACGTAATAACATTGTCGAGAATGTATTTATGGGTCAAACGAGACGTGCACAAGAAGGCTATTATCAAGGCAAT
TTGCCGCTGGGCTATGACAAAATACCTAATAGTAAACATGAACTGATGATTAATCAACATGAAGCTAATATTGTGAAATA
TATATTCGAGTCCTATGCCAAAGGACATGGCTATCGTAAAATAGCCAATGCATTAAATCACAAAGGCTATGTCACTAAAA
AGGGTAAACCTTTTAGTATTAGTTCTATCACATATATATTAGCTAACCCATTCTATATCGGCAAAATTCAATTTGCGAAA
TACAAAGATTGGAGTGAAAAACGTCGTAAAGGGCTTAATGATAAACCAGTGATAGCTGAAGGGAAGCATTCCCCCATTAT
TAATCAAGATTTATGGAATAAAGTACAAATACGTAAAAAACAAGTCAGTCAAAAACCCCAAGTCCATGGCAAAGGAACAA
ATCTGCTTACAGGCATTATTCACTGTCCCCAATGTGGCGCACCTATGGCAGCAAGCAATACAACGAATACACTTAAAGAT
GGAACCAAGAAACGTATACGTTACTATTCATGTAGTAATTTTCGCAACAAGGGGTCCAAAGTATGTTCGGCAAACAGTGT
AAGAGCTGATGTGATTGAAGATTATGTGATGAAGCAAATACTCGAAATAGTCAAAAGTGATAAAGTCATTGAACGCGTTG
TAGCACGTGTTAATCAAGAAAATAAAGTTGATGGCGCTGCACTTCATCACGATATTGCTTATAAGCAACAACAATATGAT
GAAGTACAAACCAAACTAAATAACTTGATTAAAACCATAGAGGATAATCCGGACTTAACATCAGTAATCAGACCAAGTAT
TCAAAAATATGAAAAGCAACTCAATGACATTACGAATCAAATCAACCAACTCAAAAATCAACAAAATGAAGATAAGTCTT
TATTTGATGCCAAACAAATCAGTAAACTATTACAACACATCTTTCAAGATATTAAGCACATGGAAAAATCTCGACTCAAA
GCATTGTACCTATCAGTGATTGATCGTATTAATATTAGAAAAGATGGTAATCATAAAAAACAATTCTATGTCACACTCAA
ACTTAATAACGAAATCATTAAACAACTTTTCAATAATAAACAACTCGACGAAGTGCATCTCAGCACTTCGTCTTTATTTT
TGCCCCAAACACTATATCTTACTATTTAG

Domains

Predicted by InterproScan.

Ogr/Delta-like zinc finger (Ogr_Delta)

(301-356)

Recombinase (Recombinase)

(180-279)

Resolvase, N terminal domain (Resolvase)

(11-156)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ccrB Staphylococcus aureus N315

96.679

100

0.967