Detailed information    

insolico Bioinformatically predicted

Overview

Name   ccrB   Type   Machinery gene
Locus tag   LQF30_RS11780 Genome accession   NZ_CP088002
Coordinates   2454975..2456603 (+) Length   542 a.a.
NCBI ID   WP_263926382.1    Uniprot ID   -
Organism   Staphylococcus epidermidis strain IVK83     
Function   promote SCCmec transfer (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2449975..2461603
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LQF30_RS11765 (LQF30_11725) ssb 2451287..2451583 (+) 297 WP_000221968.1 cassette chromosome ssDNA-binding protein -
  LQF30_RS11770 (LQF30_11730) cch1 2451583..2453370 (+) 1788 WP_258500368.1 cassette chromosome replicative helicase -
  LQF30_RS11775 (LQF30_11735) ccrA 2453604..2454953 (+) 1350 WP_258500367.1 cassette chromosome recombinase CcrA Machinery gene
  LQF30_RS11780 (LQF30_11740) ccrB 2454975..2456603 (+) 1629 WP_263926382.1 cassette chromosome recombinase CcrB Machinery gene
  LQF30_RS11785 (LQF30_11745) - 2457125..2457474 (+) 350 Protein_2277 SAUGI family uracil-DNA glycosylase inhibitor -
  LQF30_RS11790 (LQF30_11750) - 2457561..2457872 (+) 312 WP_002468076.1 DUF960 family protein -
  LQF30_RS11795 (LQF30_11755) - 2457887..2458390 (+) 504 WP_002468073.1 DUF1643 domain-containing protein -
  LQF30_RS11800 (LQF30_11760) gtfB 2458571..2459890 (-) 1320 WP_263926384.1 accessory Sec system glycosylation chaperone GtfB -
  LQF30_RS11805 (LQF30_11765) gtfA 2459883..2461391 (-) 1509 WP_001551920.1 accessory Sec system glycosyltransferase GtfA -

Sequence

Protein


Download         Length: 542 a.a.        Molecular weight: 62710.97 Da        Isoelectric Point: 10.0137

>NTDB_id=632280 LQF30_RS11780 WP_263926382.1 2454975..2456603(+) (ccrB) [Staphylococcus epidermidis strain IVK83]
MQQFKTKRVGIYVRVSTEMQSIEGFSIDGQINQIKEYCEFHHFEVKDIYADRGISGKSMNRPELQRMLKDAKEGYIDCVM
VYKTNRLARNTSDLLKIVEDLHKQNVEFFSLSERMEVNTSSGKLMLQILASFSEFERNNIVENVFMGQTRRAQEGYYQGN
LPLGYDKIPNSKHELMINQHEANIVKYIFESYAKGHGYRKIANALNHKGYVTKKGKPFSISSITYILANPFYIGKIQFAK
YKDWSEKRRKGLNDKPVIAEGKHSPIINQDLWNKVQIRKKQVSQKPQVHGKGTNLLTGIIHCPQCGAPMAASNTTNTLKD
GTKKRIRYYSCSNFRNKGSKVCSANSVRADVIEDYVMKQILEIVKSDKVIERVVARVNQENKVDGAALHHDIAYKQQQYD
EVQTKLNNLIKTIEDNPDLTSVIRPSIQKYEKQLNDITNQINQLKNQQNEDKSLFDAKQISKLLQHIFQDIKHMEKSRLK
ALYLSVIDRINIRKDGNHKKQFYVTLKLNNEIIKQLFNNKQLDEVHLSTSSLFLPQTLYLTI

Nucleotide


Download         Length: 1629 bp        

>NTDB_id=632280 LQF30_RS11780 WP_263926382.1 2454975..2456603(+) (ccrB) [Staphylococcus epidermidis strain IVK83]
ATGCAACAATTTAAAACAAAACGTGTCGGTATCTATGTACGTGTATCAACAGAAATGCAAAGCATAGAAGGATTTAGTAT
CGACGGACAAATTAATCAGATTAAAGAATATTGTGAGTTCCATCATTTTGAAGTCAAAGATATCTATGCCGACCGTGGTA
TTTCAGGTAAATCTATGAATCGACCTGAGCTCCAACGTATGTTGAAGGATGCGAAAGAAGGCTATATCGACTGTGTTATG
GTCTACAAAACAAACCGATTAGCTCGTAATACATCTGATCTTCTCAAAATTGTCGAAGATTTACACAAACAAAATGTCGA
ATTTTTCAGTTTATCAGAGCGTATGGAAGTCAATACTTCTTCTGGTAAACTCATGTTACAAATACTTGCGAGTTTCTCAG
AATTCGAACGTAATAACATTGTCGAGAATGTATTTATGGGTCAAACGAGACGTGCACAAGAAGGCTATTATCAAGGCAAT
TTGCCGCTGGGCTATGACAAAATACCTAATAGTAAACATGAACTGATGATTAATCAACATGAAGCTAATATTGTGAAATA
TATATTCGAGTCCTATGCCAAAGGACATGGCTATCGTAAAATAGCCAATGCATTAAATCACAAAGGCTATGTCACTAAAA
AGGGTAAACCTTTTAGTATTAGTTCTATCACATATATATTAGCTAACCCATTCTATATCGGCAAAATTCAATTTGCGAAA
TACAAAGATTGGAGTGAAAAACGTCGTAAAGGGCTTAATGATAAACCAGTGATAGCTGAAGGGAAGCATTCCCCCATTAT
TAATCAAGATTTATGGAATAAAGTACAAATACGTAAAAAACAAGTCAGTCAAAAACCCCAAGTCCATGGCAAAGGAACAA
ATCTGCTTACAGGCATTATTCACTGTCCCCAATGTGGCGCACCTATGGCAGCAAGCAATACAACGAATACACTTAAAGAT
GGAACCAAGAAACGTATACGTTACTATTCATGTAGTAATTTTCGCAACAAGGGGTCCAAAGTATGTTCGGCAAACAGTGT
AAGAGCTGATGTGATTGAAGATTATGTGATGAAGCAAATACTCGAAATAGTCAAAAGTGATAAAGTCATTGAACGCGTTG
TAGCACGTGTTAATCAAGAAAATAAAGTTGATGGCGCTGCACTTCATCACGATATTGCTTATAAGCAACAACAATATGAT
GAAGTACAAACCAAACTAAATAACTTGATTAAAACCATAGAGGATAATCCGGACTTAACATCAGTAATCAGACCAAGTAT
TCAAAAATATGAAAAGCAACTCAATGACATTACGAATCAAATCAACCAACTCAAAAATCAACAAAATGAAGATAAGTCTT
TATTTGATGCCAAACAAATCAGTAAACTATTACAACACATCTTTCAAGATATTAAGCACATGGAAAAATCTCGACTCAAA
GCATTGTACCTATCAGTGATTGATCGTATTAATATTAGAAAAGATGGTAATCATAAAAAACAATTCTATGTCACACTCAA
ACTTAATAACGAAATCATTAAACAACTTTTCAATAATAAACAACTCGACGAAGTGCATCTCAGCACTTCGTCTTTATTTT
TGCCCCAAACACTATATCTTACTATTTAG

Domains

Predicted by InterProScan.

Ogr/Delta-like zinc finger (Ogr_Delta)

(301-356)

Recombinase (Recombinase)

(180-279)

Resolvase, N terminal domain (Resolvase)

(11-156)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ccrB Staphylococcus aureus N315

96.679

100

0.967