Detailed information    

insolico Bioinformatically predicted

Overview

Name   ccrA   Type   Machinery gene
Locus tag   LQF30_RS11775 Genome accession   NZ_CP088002
Coordinates   2453604..2454953 (+) Length   449 a.a.
NCBI ID   WP_258500367.1    Uniprot ID   -
Organism   Staphylococcus epidermidis strain IVK83     
Function   promote SCCmec transfer (predicted from homology)   
Homologous recombination

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
SCCmec 2446258..2456603 2453604..2454953 within 0


Gene organization within MGE regions


Location: 2446258..2456603
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LQF30_RS11740 (LQF30_11700) - 2446258..2446755 (-) 498 WP_258500373.1 hypothetical protein -
  LQF30_RS11745 (LQF30_11705) - 2447132..2447257 (-) 126 WP_258500372.1 FRG domain-containing protein -
  LQF30_RS11750 (LQF30_11710) - 2447725..2448102 (-) 378 WP_258500371.1 hypothetical protein -
  LQF30_RS11755 (LQF30_11715) - 2448528..2449460 (-) 933 WP_000364405.1 hypothetical protein -
  LQF30_RS11760 (LQF30_11720) - 2449532..2451115 (-) 1584 WP_258500369.1 hypothetical protein -
  LQF30_RS11765 (LQF30_11725) ssb 2451287..2451583 (+) 297 WP_000221968.1 cassette chromosome ssDNA-binding protein -
  LQF30_RS11770 (LQF30_11730) cch1 2451583..2453370 (+) 1788 WP_258500368.1 cassette chromosome replicative helicase -
  LQF30_RS11775 (LQF30_11735) ccrA 2453604..2454953 (+) 1350 WP_258500367.1 cassette chromosome recombinase CcrA Machinery gene
  LQF30_RS11780 (LQF30_11740) ccrB 2454975..2456603 (+) 1629 WP_263926382.1 cassette chromosome recombinase CcrB Machinery gene

Sequence

Protein


Download         Length: 449 a.a.        Molecular weight: 52843.55 Da        Isoelectric Point: 10.0602

>NTDB_id=632279 LQF30_RS11775 WP_258500367.1 2453604..2454953(+) (ccrA) [Staphylococcus epidermidis strain IVK83]
MKQVIGYLRQSTMKQQSLAAQKQAIEAIAEKHHIQHINFYSDKQSGRKDNRSGYRQITKLIQQGQCDILCCYRLNRLHRN
LKNALKLIKLCQTYRVHILSVHDGYFDMDQAFDRFKLNIFISLAELESDNIGEQVRNGLQEKAKQGRLITTHAPFGYEYH
NGTFIINQNESPTVKAVFNYYIKGHGYKKIAQLLEEDNTYINRQPYQVRNIIINPNYCGRVNNQYGQFDNMFPSIVSTSI
YEQAQRLRLQKQTKQTSSDNQLKQKIKCPCCNATLTNMTVRKKNHILRYYVCPKNMNASRFVCDFKGVNAQTLEDKVLEV
CRDFYQNQRIHTKIKGAIDKRIKRQRNIEKHHTLTQEQLIEKLAQGIIDTETFREQTQSLRQQRQRTTFINEHQIQHTIQ
NIIQKRFTLNILYPYIETIHITKDKNLIGIYFKNEPLNIVNQTMQSSIA

Nucleotide


Download         Length: 1350 bp        

>NTDB_id=632279 LQF30_RS11775 WP_258500367.1 2453604..2454953(+) (ccrA) [Staphylococcus epidermidis strain IVK83]
ATGAAACAAGTCATAGGCTATTTACGTCAAAGTACGATGAAACAACAATCTCTTGCAGCACAGAAACAAGCTATCGAAGC
AATAGCCGAAAAACATCATATTCAACATATCAACTTTTATAGCGACAAACAATCAGGACGCAAAGATAATCGTAGTGGGT
ATCGACAAATAACAAAATTAATTCAACAAGGACAATGTGACATATTATGCTGTTATCGTCTTAATAGGTTGCATCGTAAT
TTGAAAAATGCATTAAAACTCATCAAATTATGTCAAACATATCGCGTTCATATCTTAAGTGTGCATGATGGTTATTTTGA
TATGGATCAAGCTTTCGACCGATTCAAGCTTAATATTTTTATCAGCTTGGCCGAACTTGAATCAGATAACATTGGAGAAC
AAGTCAGAAATGGGCTTCAAGAAAAAGCAAAGCAAGGTCGATTGATTACAACCCATGCGCCCTTTGGTTACGAATATCAC
AACGGAACATTCATCATCAATCAAAATGAGTCACCAACGGTAAAGGCTGTATTCAATTATTACATTAAAGGTCATGGTTA
TAAGAAAATTGCACAGTTATTAGAAGAAGATAACACGTATATCAATCGACAACCCTATCAAGTTCGTAACATTATCATCA
ATCCTAATTATTGTGGTCGTGTCAACAATCAATATGGCCAATTCGACAATATGTTTCCTTCTATTGTTTCCACAAGTATA
TATGAGCAAGCGCAGAGACTTCGATTGCAAAAACAAACCAAACAGACATCTTCGGATAATCAACTCAAACAAAAAATCAA
ATGCCCATGTTGTAATGCAACACTTACAAATATGACCGTTAGAAAAAAGAATCATATATTACGTTACTACGTCTGTCCTA
AAAACATGAATGCTTCACGCTTTGTTTGTGATTTTAAAGGCGTCAATGCACAAACACTTGAAGATAAAGTATTAGAAGTG
TGCCGAGACTTTTATCAAAATCAACGCATCCACACAAAAATTAAAGGTGCGATTGACAAACGCATCAAAAGACAAAGAAA
CATAGAAAAACATCACACATTGACTCAAGAACAACTGATAGAAAAATTGGCACAAGGCATCATTGATACAGAAACGTTCA
GAGAACAAACGCAATCATTACGTCAACAACGGCAACGCACTACATTCATCAATGAGCATCAAATACAACACACCATTCAA
AATATTATTCAAAAACGTTTCACGTTAAACATATTGTACCCCTATATTGAGACCATTCACATTACTAAAGATAAAAATCT
TATAGGAATCTATTTCAAAAATGAACCACTCAATATCGTCAATCAAACCATGCAATCATCGATTGCATAA

Domains

Predicted by InterproScan.

Resolvase, N terminal domain (Resolvase)

(4-147)

Recombinase zinc beta ribbon domain (Zn_ribbon_recom)

(262-321)

Recombinase (Recombinase)

(169-248)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ccrA Staphylococcus aureus N315

96.659

100

0.967
  ccrA Staphylococcus aureus COL

73.942

100

0.739