Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   LQF30_RS08095 Genome accession   NZ_CP088002
Coordinates   1666936..1667331 (-) Length   131 a.a.
NCBI ID   WP_002457121.1    Uniprot ID   A0A7H5C5S7
Organism   Staphylococcus epidermidis strain IVK83     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1661936..1672331
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LQF30_RS08070 (LQF30_08055) thiE 1662676..1663314 (-) 639 WP_002505076.1 thiamine phosphate synthase -
  LQF30_RS08075 (LQF30_08060) thiM 1663320..1664108 (-) 789 WP_001829971.1 hydroxyethylthiazole kinase -
  LQF30_RS08080 (LQF30_08065) thiD 1664101..1664922 (-) 822 WP_001832736.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  LQF30_RS08085 (LQF30_08070) tenA 1664915..1665604 (-) 690 WP_001829894.1 thiaminase II -
  LQF30_RS08090 (LQF30_08075) - 1665889..1666548 (-) 660 WP_001829904.1 transglycosylase family protein -
  LQF30_RS08095 (LQF30_08080) ssb 1666936..1667331 (-) 396 WP_002457121.1 single-stranded DNA-binding protein Machinery gene
  LQF30_RS08100 (LQF30_08085) - 1667522..1667962 (+) 441 WP_001829935.1 YwpF-like family protein -
  LQF30_RS08105 (LQF30_08090) fabZ 1668280..1668717 (-) 438 WP_001829953.1 3-hydroxyacyl-ACP dehydratase FabZ -
  LQF30_RS08110 (LQF30_08095) murA 1668751..1670016 (-) 1266 WP_001829978.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  LQF30_RS08115 (LQF30_08100) - 1670126..1670359 (-) 234 WP_002456242.1 DUF1146 family protein -
  LQF30_RS08120 (LQF30_08105) - 1670508..1670912 (-) 405 WP_258500181.1 F0F1 ATP synthase subunit epsilon -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 15159.02 Da        Isoelectric Point: 5.2661

>NTDB_id=632273 LQF30_RS08095 WP_002457121.1 1666936..1667331(-) (ssb) [Staphylococcus epidermidis strain IVK83]
MLNKIVIVGRMTKDAQIYEKEDNKIATFCVATERNYKDDNNEISTDYLLCKAFGKTATNIEKYTSQGTLVGITGQMRSRK
YEKEGQTHFVTELYVETIKFMSPKNKNNETPSDNQFENNTYQPDDLEIIHI

Nucleotide


Download         Length: 396 bp        

>NTDB_id=632273 LQF30_RS08095 WP_002457121.1 1666936..1667331(-) (ssb) [Staphylococcus epidermidis strain IVK83]
ATGTTAAATAAAATAGTCATTGTTGGTAGAATGACGAAAGATGCTCAAATCTATGAAAAGGAGGATAACAAAATAGCAAC
ATTTTGCGTTGCTACAGAAAGAAACTACAAAGATGATAATAATGAAATTTCTACAGATTATTTACTTTGTAAAGCTTTCG
GTAAAACTGCCACTAATATTGAAAAGTACACTAGTCAAGGTACTTTAGTAGGTATAACTGGACAAATGCGTTCAAGAAAA
TATGAAAAAGAAGGCCAAACACATTTTGTTACAGAATTATACGTTGAAACAATAAAATTCATGTCCCCAAAAAATAAAAA
CAATGAAACTCCCTCTGATAATCAATTTGAAAACAACACTTATCAACCTGATGATTTAGAAATAATTCATATTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7H5C5S7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

74.046

100

0.74
  ssb Staphylococcus aureus MW2

73.282

100

0.733