Detailed information
Bioinformatically predicted
Overview
| Name | dprA | Type | Machinery gene |
| Locus tag | LQF30_RS04365 | Genome accession | NZ_CP088002 |
| Coordinates | 880420..881292 (+) | Length | 290 a.a. |
| NCBI ID | WP_258499845.1 | Uniprot ID | - |
| Organism | Staphylococcus epidermidis strain IVK83 | ||
| Function | ssDNA binding; loading RecA onto ssDNA (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| ICE | 850482..902448 | 880420..881292 | within | 0 |
Gene organization within MGE regions
Location: 850482..902448
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LQF30_RS04240 (LQF30_04235) | rpmB | 851148..851336 (-) | 189 | WP_001830107.1 | 50S ribosomal protein L28 | - |
| LQF30_RS04245 (LQF30_04240) | - | 851694..852068 (+) | 375 | WP_001830156.1 | Asp23/Gls24 family envelope stress response protein | - |
| LQF30_RS04250 (LQF30_04245) | fakA | 852083..853741 (+) | 1659 | WP_002489351.1 | fatty acid kinase catalytic subunit FakA | - |
| LQF30_RS04255 (LQF30_04250) | recG | 853946..855994 (+) | 2049 | WP_002494962.1 | ATP-dependent DNA helicase RecG | - |
| LQF30_RS04260 (LQF30_04255) | fapR | 856153..856713 (+) | 561 | WP_001830099.1 | transcription factor FapR | - |
| LQF30_RS04265 (LQF30_04260) | plsX | 856715..857692 (+) | 978 | WP_002469384.1 | phosphate acyltransferase PlsX | - |
| LQF30_RS04270 (LQF30_04265) | fabD | 857694..858620 (+) | 927 | WP_258499846.1 | ACP S-malonyltransferase | - |
| LQF30_RS04275 (LQF30_04270) | fabG | 858613..859347 (+) | 735 | WP_001830161.1 | 3-oxoacyl-[acyl-carrier-protein] reductase | - |
| LQF30_RS04280 (LQF30_04275) | - | 859575..859808 (+) | 234 | WP_001830184.1 | acyl carrier protein | - |
| LQF30_RS04285 (LQF30_04280) | rnc | 859923..860660 (+) | 738 | WP_002456575.1 | ribonuclease III | - |
| LQF30_RS04290 (LQF30_04285) | smc | 860787..864356 (+) | 3570 | WP_151516630.1 | chromosome segregation protein SMC | - |
| LQF30_RS04295 (LQF30_04290) | ftsY | 864353..865579 (+) | 1227 | WP_002456573.1 | signal recognition particle-docking protein FtsY | - |
| LQF30_RS04300 (LQF30_04295) | - | 865581..865913 (+) | 333 | WP_002457379.1 | putative DNA-binding protein | - |
| LQF30_RS04305 (LQF30_04300) | ffh | 865944..867311 (+) | 1368 | WP_107511267.1 | signal recognition particle protein | - |
| LQF30_RS04310 (LQF30_04305) | rpsP | 867619..867894 (+) | 276 | WP_002439483.1 | 30S ribosomal protein S16 | - |
| LQF30_RS04315 (LQF30_04310) | rimM | 868021..868524 (+) | 504 | WP_001832559.1 | ribosome maturation factor RimM | - |
| LQF30_RS04320 (LQF30_04315) | trmD | 868524..869261 (+) | 738 | WP_001829466.1 | tRNA (guanosine(37)-N1)-methyltransferase TrmD | - |
| LQF30_RS04325 (LQF30_04320) | rplS | 869367..869717 (+) | 351 | WP_002436293.1 | 50S ribosomal protein L19 | - |
| LQF30_RS04330 (LQF30_04325) | - | 870248..872851 (-) | 2604 | WP_151515907.1 | YfhO family protein | - |
| LQF30_RS04335 (LQF30_04330) | - | 872844..875444 (-) | 2601 | WP_151515906.1 | YfhO family protein | - |
| LQF30_RS04340 (LQF30_04335) | ylqF | 875773..876636 (+) | 864 | WP_002468554.1 | ribosome biogenesis GTPase YlqF | - |
| LQF30_RS04345 (LQF30_04340) | - | 876641..877411 (+) | 771 | WP_001829514.1 | ribonuclease HII | - |
| LQF30_RS04350 (LQF30_04345) | sucC | 877519..878685 (+) | 1167 | WP_002439496.1 | ADP-forming succinate--CoA ligase subunit beta | - |
| LQF30_RS04355 (LQF30_04350) | sucD | 878707..879615 (+) | 909 | WP_002446283.1 | succinate--CoA ligase subunit alpha | - |
| LQF30_RS04365 (LQF30_04360) | dprA | 880420..881292 (+) | 873 | WP_258499845.1 | DNA-processing protein DprA | Machinery gene |
| LQF30_RS04370 (LQF30_04365) | topA | 881475..883544 (+) | 2070 | WP_001829508.1 | type I DNA topoisomerase | - |
| LQF30_RS04375 (LQF30_04370) | trmFO | 883569..884876 (+) | 1308 | WP_001832560.1 | FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO | - |
| LQF30_RS04380 (LQF30_04375) | xerC | 885131..885991 (+) | 861 | WP_002439503.1 | tyrosine recombinase XerC | - |
| LQF30_RS04385 (LQF30_04380) | hslV | 885995..886537 (+) | 543 | WP_001829498.1 | ATP-dependent protease subunit HslV | - |
| LQF30_RS04390 (LQF30_04385) | hslU | 886606..888009 (+) | 1404 | WP_001829474.1 | ATP-dependent protease ATPase subunit HslU | - |
| LQF30_RS04395 (LQF30_04390) | codY | 888033..888806 (+) | 774 | WP_002446289.1 | GTP-sensing pleiotropic transcriptional regulator CodY | - |
| LQF30_RS04400 (LQF30_04395) | rpsB | 889165..889953 (+) | 789 | WP_001832557.1 | 30S ribosomal protein S2 | - |
| LQF30_RS04405 (LQF30_04400) | tsf | 890105..890983 (+) | 879 | WP_002439509.1 | translation elongation factor Ts | - |
| LQF30_RS04410 (LQF30_04405) | pyrH | 891124..891846 (+) | 723 | WP_002439511.1 | UMP kinase | - |
| LQF30_RS04415 (LQF30_04410) | frr | 891863..892417 (+) | 555 | WP_001829472.1 | ribosome recycling factor | - |
| LQF30_RS04420 (LQF30_04415) | - | 892638..893408 (+) | 771 | WP_001832561.1 | isoprenyl transferase | - |
| LQF30_RS04425 (LQF30_04420) | - | 893412..894194 (+) | 783 | WP_001829499.1 | phosphatidate cytidylyltransferase | - |
| LQF30_RS04430 (LQF30_04425) | rseP | 894428..895714 (+) | 1287 | WP_001829501.1 | RIP metalloprotease RseP | - |
| LQF30_RS04435 (LQF30_04430) | - | 895733..897436 (+) | 1704 | WP_001829513.1 | proline--tRNA ligase | - |
| LQF30_RS04440 (LQF30_04435) | - | 897686..901996 (+) | 4311 | WP_002456566.1 | PolC-type DNA polymerase III | - |
Sequence
Protein
Download Length: 290 a.a. Molecular weight: 33756.64 Da Isoelectric Point: 9.3618
>NTDB_id=632255 LQF30_RS04365 WP_258499845.1 880420..881292(+) (dprA) [Staphylococcus epidermidis strain IVK83]
MIQHTMLKLYWANFTTTQLHHLTSTYPDFLSENVFHQHDMIKRWLTERNSERLWNKYERFKELKLMDIIKEMKKANVSFT
TYFDDNYPSLCKEMYDYPYVIFYKGNPQFFNHSHSLAVIGSRNATQYTSQSLNYLFPSFRQLNMAIVSGLARGADSVAHQ
TALKYLLPTIGVLGFGHCYHYPKATLNLRTKVERNGLVISEYPPFSPISKHKFPERNRLISGLSRGVLITEAEERSGSQI
TIDCALEQNRNVYVLPGSMFNKMTKGNLRRINEGAQVVIDESSILYDYLF
MIQHTMLKLYWANFTTTQLHHLTSTYPDFLSENVFHQHDMIKRWLTERNSERLWNKYERFKELKLMDIIKEMKKANVSFT
TYFDDNYPSLCKEMYDYPYVIFYKGNPQFFNHSHSLAVIGSRNATQYTSQSLNYLFPSFRQLNMAIVSGLARGADSVAHQ
TALKYLLPTIGVLGFGHCYHYPKATLNLRTKVERNGLVISEYPPFSPISKHKFPERNRLISGLSRGVLITEAEERSGSQI
TIDCALEQNRNVYVLPGSMFNKMTKGNLRRINEGAQVVIDESSILYDYLF
Nucleotide
Download Length: 873 bp
>NTDB_id=632255 LQF30_RS04365 WP_258499845.1 880420..881292(+) (dprA) [Staphylococcus epidermidis strain IVK83]
TTGATACAACATACGATGTTAAAACTATATTGGGCAAATTTCACTACGACACAACTTCATCATCTTACAAGTACATATCC
TGACTTTCTATCAGAAAACGTATTTCATCAACATGACATGATAAAAAGGTGGCTTACAGAGCGTAATTCTGAAAGGCTAT
GGAACAAATATGAACGTTTCAAAGAATTAAAGCTGATGGACATTATTAAAGAAATGAAAAAAGCAAATGTTAGTTTTACA
ACATACTTTGATGATAACTACCCTTCTCTTTGCAAAGAAATGTATGATTATCCTTATGTGATATTCTACAAAGGAAATCC
ACAGTTCTTTAATCATTCTCACTCTTTAGCTGTAATTGGCTCACGTAATGCCACACAATATACAAGTCAATCTTTAAACT
ATCTTTTTCCTTCATTTAGACAATTAAATATGGCGATTGTTTCTGGATTAGCGCGCGGTGCAGATAGTGTAGCACATCAA
ACCGCACTTAAATACCTATTACCAACTATTGGCGTACTTGGATTTGGCCATTGTTATCATTATCCTAAAGCAACCTTAAA
TTTAAGAACTAAAGTTGAAAGGAATGGCTTAGTGATAAGTGAATATCCACCATTTTCTCCTATAAGTAAGCATAAATTTC
CTGAAAGAAACAGGCTTATAAGTGGTCTGTCCAGAGGGGTACTTATAACTGAGGCTGAAGAAAGAAGTGGTAGTCAAATC
ACTATCGATTGTGCTTTAGAGCAAAATAGAAATGTTTATGTTCTACCTGGTTCAATGTTCAACAAAATGACTAAAGGTAA
TTTAAGAAGGATAAATGAAGGTGCTCAAGTTGTTATAGATGAAAGTAGTATATTATATGATTATCTATTTTAG
TTGATACAACATACGATGTTAAAACTATATTGGGCAAATTTCACTACGACACAACTTCATCATCTTACAAGTACATATCC
TGACTTTCTATCAGAAAACGTATTTCATCAACATGACATGATAAAAAGGTGGCTTACAGAGCGTAATTCTGAAAGGCTAT
GGAACAAATATGAACGTTTCAAAGAATTAAAGCTGATGGACATTATTAAAGAAATGAAAAAAGCAAATGTTAGTTTTACA
ACATACTTTGATGATAACTACCCTTCTCTTTGCAAAGAAATGTATGATTATCCTTATGTGATATTCTACAAAGGAAATCC
ACAGTTCTTTAATCATTCTCACTCTTTAGCTGTAATTGGCTCACGTAATGCCACACAATATACAAGTCAATCTTTAAACT
ATCTTTTTCCTTCATTTAGACAATTAAATATGGCGATTGTTTCTGGATTAGCGCGCGGTGCAGATAGTGTAGCACATCAA
ACCGCACTTAAATACCTATTACCAACTATTGGCGTACTTGGATTTGGCCATTGTTATCATTATCCTAAAGCAACCTTAAA
TTTAAGAACTAAAGTTGAAAGGAATGGCTTAGTGATAAGTGAATATCCACCATTTTCTCCTATAAGTAAGCATAAATTTC
CTGAAAGAAACAGGCTTATAAGTGGTCTGTCCAGAGGGGTACTTATAACTGAGGCTGAAGAAAGAAGTGGTAGTCAAATC
ACTATCGATTGTGCTTTAGAGCAAAATAGAAATGTTTATGTTCTACCTGGTTCAATGTTCAACAAAATGACTAAAGGTAA
TTTAAGAAGGATAAATGAAGGTGCTCAAGTTGTTATAGATGAAAGTAGTATATTATATGATTATCTATTTTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| dprA | Staphylococcus aureus N315 |
56.944 |
99.31 |
0.566 |
| dprA | Staphylococcus aureus MW2 |
56.944 |
99.31 |
0.566 |