Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK/comK1   Type   Regulator
Locus tag   LQF30_RS03385 Genome accession   NZ_CP088002
Coordinates   666960..667535 (+) Length   191 a.a.
NCBI ID   WP_258500211.1    Uniprot ID   -
Organism   Staphylococcus epidermidis strain IVK83     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 661960..672535
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LQF30_RS03360 (LQF30_03355) - 662858..664363 (+) 1506 WP_001829277.1 bifunctional UDP-sugar hydrolase/5'-nucleotidase -
  LQF30_RS03365 (LQF30_03360) - 664466..665068 (-) 603 WP_001829312.1 type II CAAX prenyl endopeptidase Rce1 family protein -
  LQF30_RS03370 (LQF30_03365) - 665074..665259 (-) 186 WP_001829339.1 DUF2187 family protein -
  LQF30_RS03375 (LQF30_03370) - 665464..666450 (+) 987 WP_049377001.1 lipoate--protein ligase -
  LQF30_RS03380 (LQF30_03375) - 666528..666746 (-) 219 WP_263927735.1 IDEAL domain-containing protein -
  LQF30_RS03385 (LQF30_03380) comK/comK1 666960..667535 (+) 576 WP_258500211.1 competence protein ComK Regulator
  LQF30_RS03400 (LQF30_03395) mobV 668605..669144 (+) 540 Protein_656 MobV family relaxase -
  LQF30_RS03405 (LQF30_03400) - 669346..669582 (+) 237 WP_001829451.1 hypothetical protein -
  LQF30_RS03410 (LQF30_03405) - 669795..670136 (+) 342 WP_002456621.1 fatty acid desaturase -
  LQF30_RS03415 (LQF30_03410) - 670310..670756 (+) 447 WP_228777821.1 LysE/ArgO family amino acid transporter -
  LQF30_RS03420 (LQF30_03415) - 670826..670984 (-) 159 WP_001829449.1 hypothetical protein -
  LQF30_RS12160 - 671415..671531 (-) 117 WP_353955880.1 SAR1012 family small protein -
  LQF30_RS03425 (LQF30_03420) - 671635..671850 (-) 216 WP_001831694.1 TM2 domain-containing protein -

Sequence

Protein


Download         Length: 191 a.a.        Molecular weight: 22683.73 Da        Isoelectric Point: 9.0344

>NTDB_id=632254 LQF30_RS03385 WP_258500211.1 666960..667535(+) (comK/comK1) [Staphylococcus epidermidis strain IVK83]
MTHLPETIYVIRKGDMVIRPKYDEYQQTNGTEIIRFDQTRKESPFKVQGIIERSCKFYGNNYISKKAETNRITGISSKPP
ILLTPLFPTYFFPTHSDRQEENIWINMHYIENVKELKNRKSKIIFANGDSLTLNVSFHSLWHQYTNAIIYYYMVDKQSRM
KSNNPEQPIDYNQSSLNIFEALSRYSLFEEN

Nucleotide


Download         Length: 576 bp        

>NTDB_id=632254 LQF30_RS03385 WP_258500211.1 666960..667535(+) (comK/comK1) [Staphylococcus epidermidis strain IVK83]
ATGACACATTTACCCGAAACGATTTATGTTATACGAAAAGGTGATATGGTAATACGACCTAAATATGATGAATATCAGCA
GACAAATGGTACTGAAATTATCAGATTTGATCAAACTCGCAAAGAAAGTCCATTTAAAGTACAGGGAATTATCGAAAGAT
CATGTAAATTTTATGGTAATAATTATATTAGTAAAAAAGCAGAAACGAATCGTATTACTGGAATCTCTAGTAAACCACCT
ATTTTACTTACGCCTCTTTTTCCTACTTACTTTTTTCCAACTCACTCAGACCGTCAAGAAGAAAATATATGGATTAATAT
GCATTATATTGAAAATGTTAAAGAACTTAAAAATCGTAAGAGTAAAATAATTTTTGCGAATGGTGATTCGTTAACGCTCA
ATGTATCATTTCATAGCTTGTGGCATCAATATACGAATGCAATCATCTATTATTACATGGTAGATAAGCAATCACGAATG
AAATCTAACAACCCTGAACAACCCATTGATTATAATCAGTCCTCTCTAAATATTTTCGAGGCGCTTTCACGCTACTCTCT
TTTTGAAGAAAATTAG

Domains

Predicted by InterproScan.

ComK protein (ComK)

(7-158)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK/comK1 Staphylococcus aureus MW2

76.757

96.859

0.743
  comK/comK1 Staphylococcus aureus N315

76.757

96.859

0.743