Detailed information    

insolico Bioinformatically predicted

Overview

Name   phrC   Type   Regulator
Locus tag   LOC77_RS01955 Genome accession   NZ_CP087957
Coordinates   380645..380764 (+) Length   39 a.a.
NCBI ID   WP_003156334.1    Uniprot ID   I2C1C3
Organism   Bacillus velezensis strain B-001     
Function   antagonize RapC (predicted from homology)   
Competence regulation

Genomic Context

Location: 375645..385764
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LOC77_RS01940 - 377257..377940 (+) 684 WP_143255796.1 response regulator transcription factor -
  LOC77_RS01945 - 377927..379360 (+) 1434 WP_161620115.1 sensor histidine kinase -
  LOC77_RS01950 rapC 379513..380661 (+) 1149 WP_014304340.1 Rap family tetratricopeptide repeat protein Regulator
  LOC77_RS01955 phrC 380645..380764 (+) 120 WP_003156334.1 PhrC/PhrF family phosphatase-inhibitory pheromone Regulator
  LOC77_RS01960 - 380915..381025 (-) 111 WP_369719092.1 YjcZ family sporulation protein -
  LOC77_RS01965 - 381105..382469 (-) 1365 WP_014304341.1 aspartate kinase -
  LOC77_RS01970 ceuB 382884..383837 (+) 954 WP_003156332.1 ABC transporter permease Machinery gene
  LOC77_RS01975 - 383827..384774 (+) 948 WP_003156331.1 iron chelate uptake ABC transporter family permease subunit -
  LOC77_RS01980 - 384768..385526 (+) 759 WP_003156330.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 39 a.a.        Molecular weight: 4228.96 Da        Isoelectric Point: 8.0285

>NTDB_id=632010 LOC77_RS01955 WP_003156334.1 380645..380764(+) (phrC) [Bacillus velezensis strain B-001]
MKLKSKWFVICLAAAAIFTVTGAGQTDQAEFHVAERGMT

Nucleotide


Download         Length: 120 bp        

>NTDB_id=632010 LOC77_RS01955 WP_003156334.1 380645..380764(+) (phrC) [Bacillus velezensis strain B-001]
ATGAAATTGAAATCTAAATGGTTTGTTATTTGTTTAGCAGCCGCCGCGATTTTTACAGTGACAGGTGCAGGCCAGACAGA
TCAGGCTGAATTCCATGTAGCTGAAAGAGGAATGACGTGA

Domains

Predicted by InterproScan.

Rap-phr extracellular signalling (PhrC_PhrF)

(3-39)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB I2C1C3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  phrC Bacillus subtilis subsp. subtilis str. 168

70

100

0.718