Detailed information    

insolico Bioinformatically predicted

Overview

Name   phrF   Type   Regulator
Locus tag   U471_RS17225 Genome accession   NC_022653
Coordinates   3565717..3565836 (+) Length   39 a.a.
NCBI ID   WP_007407639.1    Uniprot ID   A3KLD5
Organism   Bacillus amyloliquefaciens CC178     
Function   antagonize RapF (predicted from homology)   
Competence regulation

Genomic Context

Location: 3560717..3570836
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U471_RS17205 - 3561068..3561579 (+) 512 Protein_3402 bacteriocin biosynthesis protein AlbG -
  U471_RS17210 (U471_35950) - 3561586..3562962 (-) 1377 WP_012118684.1 YncE family protein -
  U471_RS17215 (U471_35960) - 3563002..3564357 (-) 1356 WP_012118685.1 YncE family protein -
  U471_RS17220 (U471_35970) rapF 3564588..3565733 (+) 1146 WP_012118686.1 tetratricopeptide repeat protein Regulator
  U471_RS17225 (U471_35980) phrF 3565717..3565836 (+) 120 WP_007407639.1 PhrC/PhrF family phosphatase-inhibitory pheromone Regulator
  U471_RS17230 (U471_35990) - 3566034..3566237 (+) 204 WP_007407640.1 helix-turn-helix transcriptional regulator -
  U471_RS17235 (U471_36000) - 3566251..3566454 (+) 204 WP_007407641.1 hypothetical protein -
  U471_RS17240 (U471_36010) - 3566489..3566674 (+) 186 WP_007407642.1 DUF4177 domain-containing protein -
  U471_RS17245 - 3566860..3567141 (+) 282 WP_007407643.1 hypothetical protein -
  U471_RS17250 (U471_36020) - 3567185..3567697 (+) 513 WP_023357177.1 stage II sporulation protein M -
  U471_RS17260 - 3568288..3568506 (-) 219 WP_003151056.1 helix-turn-helix transcriptional regulator -
  U471_RS17265 (U471_36040) speB 3568674..3569546 (-) 873 WP_007614448.1 agmatinase -
  U471_RS17270 (U471_36050) speE 3569605..3570435 (-) 831 WP_003151052.1 spermidine synthase -

Sequence

Protein


Download         Length: 39 a.a.        Molecular weight: 4295.19 Da        Isoelectric Point: 10.0233

>NTDB_id=63201 U471_RS17225 WP_007407639.1 3565717..3565836(+) (phrF) [Bacillus amyloliquefaciens CC178]
MKLKYKLALTCLAISTVFVSAEIASAPKHQFEVAQRGMI

Nucleotide


Download         Length: 120 bp        

>NTDB_id=63201 U471_RS17225 WP_007407639.1 3565717..3565836(+) (phrF) [Bacillus amyloliquefaciens CC178]
ATGAAATTGAAGTATAAATTAGCACTTACTTGCTTGGCAATAAGCACTGTTTTTGTTTCAGCCGAAATCGCAAGTGCACC
GAAACATCAATTTGAAGTTGCTCAGCGCGGAATGATTTAA

Domains

Predicted by InterproScan.

Rap-phr extracellular signalling (PhrC_PhrF)

(3-39)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A3KLD5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  phrF Bacillus subtilis subsp. subtilis str. 168

74.074

69.231

0.513
  phrC Bacillus subtilis subsp. subtilis str. 168

46.154

100

0.462

Multiple sequence alignment