Detailed information    

insolico Bioinformatically predicted

Overview

Name   nin/comJ   Type   Regulator
Locus tag   LOC77_RS01750 Genome accession   NZ_CP087957
Coordinates   321241..321639 (-) Length   132 a.a.
NCBI ID   WP_043866822.1    Uniprot ID   -
Organism   Bacillus velezensis strain B-001     
Function   represses the expression of nucA (predicted from homology)   
Competence regulation

Genomic Context

Location: 316241..326639
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LOC77_RS01715 - 317240..317404 (-) 165 Protein_297 molybdopterin dinucleotide binding domain-containing protein -
  LOC77_RS01720 - 317518..318720 (+) 1203 WP_057080005.1 GTP-binding protein -
  LOC77_RS01725 - 318785..319921 (+) 1137 WP_230639731.1 zinc-dependent alcohol dehydrogenase -
  LOC77_RS01730 - 319936..320370 (+) 435 WP_057080003.1 RDD family protein -
  LOC77_RS01735 - 320442..320762 (+) 321 WP_044053437.1 YckD family protein -
  LOC77_RS01740 - 320866..320982 (+) 117 WP_015388718.1 family 1 glycosylhydrolase -
  LOC77_RS01745 - 320981..321200 (+) 220 Protein_303 family 1 glycosylhydrolase -
  LOC77_RS01750 nin/comJ 321241..321639 (-) 399 WP_043866822.1 competence protein ComJ Regulator
  LOC77_RS01755 nucA/comI 321661..322098 (-) 438 WP_003156588.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  LOC77_RS01760 hxlB 322457..323014 (-) 558 WP_014304318.1 6-phospho-3-hexuloisomerase -
  LOC77_RS01765 hxlA 323011..323646 (-) 636 WP_014304319.1 3-hexulose-6-phosphate synthase -
  LOC77_RS01770 - 323878..324240 (+) 363 WP_014304320.1 winged helix-turn-helix transcriptional regulator -

Sequence

Protein


Download         Length: 132 a.a.        Molecular weight: 15014.99 Da        Isoelectric Point: 4.6564

>NTDB_id=632007 LOC77_RS01750 WP_043866822.1 321241..321639(-) (nin/comJ) [Bacillus velezensis strain B-001]
MNKSWKPQELAISYHQFTIFQKDSEPPVIDWTDEAIEKGYAEADGAVSFEARRNTRAFIVLRLNTSEPVLSYEKKATVPF
EAVKDGIEIESVMSKRLFFNIPKGRYSLTCYSVPAEISDLHADTYIIDADAM

Nucleotide


Download         Length: 399 bp        

>NTDB_id=632007 LOC77_RS01750 WP_043866822.1 321241..321639(-) (nin/comJ) [Bacillus velezensis strain B-001]
TTGAATAAATCATGGAAACCGCAAGAACTGGCCATTTCGTATCATCAATTTACAATCTTCCAAAAAGATTCAGAACCGCC
TGTTATCGATTGGACCGATGAAGCCATTGAAAAAGGATATGCGGAAGCTGACGGAGCTGTTTCATTCGAAGCAAGAAGAA
ATACGAGGGCATTTATCGTCCTCAGGCTTAACACAAGTGAACCGGTACTATCCTATGAGAAAAAAGCGACTGTTCCCTTT
GAGGCTGTAAAAGATGGAATTGAGATTGAAAGCGTGATGTCAAAGCGGCTTTTCTTTAATATTCCGAAAGGCCGATACAG
CCTTACCTGTTATTCAGTGCCTGCCGAAATATCCGATCTTCATGCGGATACGTATATTATTGATGCAGACGCAATGTAA

Domains

Predicted by InterproScan.

Competence protein J (ComJ) (ComJ)

(9-129)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nin/comJ Bacillus subtilis subsp. subtilis str. 168

76.744

97.727

0.75