Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   U471_RS14345 Genome accession   NC_022653
Coordinates   2991416..2992060 (-) Length   214 a.a.
NCBI ID   WP_003152052.1    Uniprot ID   A3KLB8
Organism   Bacillus amyloliquefaciens CC178     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 2986416..2997060
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U471_RS14310 (U471_29720) - 2987601..2988032 (+) 432 WP_007408670.1 Na(+)/H(+) antiporter subunit B -
  U471_RS14315 (U471_29730) - 2988032..2988373 (+) 342 WP_003152063.1 Na(+)/H(+) antiporter subunit C -
  U471_RS14320 (U471_29740) - 2988366..2989847 (+) 1482 WP_041482212.1 Na+/H+ antiporter subunit D -
  U471_RS14325 (U471_29750) - 2989853..2990329 (+) 477 WP_007408672.1 Na+/H+ antiporter subunit E -
  U471_RS14330 (U471_29760) - 2990329..2990613 (+) 285 WP_012118311.1 Na(+)/H(+) antiporter subunit F1 -
  U471_RS14335 (U471_29770) mnhG 2990597..2990971 (+) 375 WP_003152056.1 monovalent cation/H(+) antiporter subunit G -
  U471_RS14340 (U471_29780) - 2991011..2991394 (-) 384 WP_012118312.1 hotdog fold thioesterase -
  U471_RS14345 (U471_29790) comA 2991416..2992060 (-) 645 WP_003152052.1 response regulator transcription factor Regulator
  U471_RS14350 (U471_29800) comP 2992141..2994441 (-) 2301 WP_012118313.1 histidine kinase Regulator
  U471_RS19480 (U471_29810) comX 2994455..2994628 (-) 174 WP_012118314.1 competence pheromone ComX -
  U471_RS14355 (U471_29820) - 2994597..2995457 (-) 861 WP_012118315.1 polyprenyl synthetase family protein -
  U471_RS14360 (U471_29830) degQ 2995665..2995805 (-) 141 WP_003152043.1 degradation enzyme regulation protein DegQ Regulator
  U471_RS14365 (U471_29840) - 2996270..2996611 (+) 342 WP_012118316.1 hypothetical protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24271.68 Da        Isoelectric Point: 4.9953

>NTDB_id=63188 U471_RS14345 WP_003152052.1 2991416..2992060(-) (comA) [Bacillus amyloliquefaciens CC178]
MKKILVIDDHPAVMEGTKTILETDTNLSVDCLSPDASEQFVLRHDFSAYDLILMDLNLGDDISGIELSKKILKENPLCKI
IVYTGYEVEDYFEESIRAGLHGAISKTESKEKIMQYIYHVLNGQILVDFSYFKQLMTQQKTKTSSSPQSEQDRLTPRERH
ILQEVEKGLTNQEIADALHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSDNVL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=63188 U471_RS14345 WP_003152052.1 2991416..2992060(-) (comA) [Bacillus amyloliquefaciens CC178]
ATGAAAAAGATACTAGTGATTGATGATCATCCGGCTGTCATGGAGGGCACCAAGACGATTCTGGAAACGGACACGAATCT
TTCTGTCGATTGCCTCAGTCCTGATGCCAGTGAACAATTCGTTCTCCGGCATGATTTTTCAGCTTACGATCTCATATTAA
TGGATTTAAATCTGGGTGATGACATCAGCGGCATAGAGCTTTCCAAGAAAATCTTAAAAGAGAATCCTCTCTGTAAAATC
ATTGTCTACACAGGCTATGAGGTTGAAGATTATTTTGAAGAATCCATCCGCGCGGGCCTGCATGGCGCCATCAGCAAAAC
CGAATCTAAAGAGAAAATCATGCAATACATATATCACGTGCTCAACGGACAGATTTTAGTTGATTTCTCCTATTTCAAAC
AGCTGATGACCCAGCAAAAAACAAAAACGTCTTCTTCCCCTCAAAGTGAGCAGGATCGGTTAACCCCGAGAGAGCGCCAT
ATTCTCCAAGAGGTCGAAAAAGGTTTGACCAATCAGGAAATCGCAGATGCGCTTCACTTAAGCAAGCGGTCGATTGAATA
CAGCCTGACGTCCATTTTTAACAAGCTGAATGTCGGCTCCCGAACTGAAGCGGTGCTGATCGCCAAGTCAGATAACGTAC
TATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-117)

Bacterial regulatory proteins, luxR family (GerE)

(153-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A3KLB8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

86.449

100

0.864

Multiple sequence alignment