Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   LP099_RS11265 Genome accession   NZ_CP087828
Coordinates   2218257..2218448 (+) Length   63 a.a.
NCBI ID   WP_264690226.1    Uniprot ID   -
Organism   Moraxella bovis strain SAM102600     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 2213257..2223448
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LP099_RS11250 (LP099_11150) - 2214061..2214696 (+) 636 WP_078274916.1 response regulator -
  LP099_RS11255 (LP099_11155) - 2214693..2216408 (+) 1716 WP_264684225.1 sensor histidine kinase -
  LP099_RS11260 (LP099_11160) - 2216539..2218125 (+) 1587 WP_264690225.1 sigma-54-dependent transcriptional regulator -
  LP099_RS11265 (LP099_11165) pilR 2218257..2218448 (+) 192 WP_264690226.1 helix-turn-helix domain-containing protein Regulator
  LP099_RS11270 (LP099_11170) - 2218522..2219919 (-) 1398 WP_228157773.1 S41 family peptidase -
  LP099_RS11275 (LP099_11175) gpmI 2219916..2221472 (-) 1557 WP_078274913.1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase -
  LP099_RS11290 (LP099_11190) - 2222117..2223106 (-) 990 WP_078274912.1 hypothetical protein -

Sequence

Protein


Download         Length: 63 a.a.        Molecular weight: 7072.03 Da        Isoelectric Point: 4.9621

>NTDB_id=631704 LP099_RS11265 WP_264690226.1 2218257..2218448(+) (pilR) [Moraxella bovis strain SAM102600]
MANGELPSQGLEAYLIDQERQIICNALQRAGGNKTQAAKLLGMTFRSLRYRMKKLDIDDGDDE

Nucleotide


Download         Length: 192 bp        

>NTDB_id=631704 LP099_RS11265 WP_264690226.1 2218257..2218448(+) (pilR) [Moraxella bovis strain SAM102600]
TTGGCAAACGGCGAACTACCCAGTCAAGGACTAGAAGCTTACTTGATTGACCAAGAACGTCAAATAATCTGCAACGCTTT
ACAGCGGGCAGGAGGTAATAAAACCCAAGCCGCCAAACTGCTTGGCATGACCTTTCGCTCTCTGCGTTATCGCATGAAAA
AACTTGATATCGATGATGGCGACGATGAATAA

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(17-55)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Acinetobacter baumannii strain A118

57.895

90.476

0.524
  pilR Pseudomonas aeruginosa PAK

58.333

76.19

0.444