Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   LP123_RS10490 Genome accession   NZ_CP087823
Coordinates   2053485..2054390 (+) Length   301 a.a.
NCBI ID   WP_115369272.1    Uniprot ID   -
Organism   Moraxella bovis strain SAM102602     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2048485..2059390
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LP123_RS10480 (LP123_10380) recG 2049822..2051915 (-) 2094 WP_264690264.1 ATP-dependent DNA helicase RecG -
  LP123_RS10485 (LP123_10385) pilC 2052262..2053485 (+) 1224 WP_078273700.1 type II secretion system F family protein Machinery gene
  LP123_RS10490 (LP123_10390) pilD 2053485..2054390 (+) 906 WP_115369272.1 prepilin peptidase Machinery gene
  LP123_RS10500 (LP123_10400) glnD 2054634..2057411 (+) 2778 WP_264675929.1 [protein-PII] uridylyltransferase -
  LP123_RS10505 (LP123_10405) - 2057469..2058317 (+) 849 WP_078273701.1 WG repeat-containing protein -

Sequence

Protein


Download         Length: 301 a.a.        Molecular weight: 32954.32 Da        Isoelectric Point: 8.4686

>NTDB_id=631659 LP123_RS10490 WP_115369272.1 2053485..2054390(+) (pilD) [Moraxella bovis strain SAM102602]
MNCFTFLSENLYIALALAGLLGLCVGSFLNVVIHRTPLIMNREWRKDTAWFLGTQSDLNPKHVNPIQDVIANDIPISLSF
PPSRCPKCNHQIRAYENIPVLSWLILLRGKCSGCGNPISMRYPLVELITALLSVLVIYTLGANIAGALGLIYLWILIALT
GIDFDTQLLPDRLVFPLGMMGLMANTQNIFTSVSSAVWGGLLGFLSFWSVAKLYALITKKDGMGAGDFKLLGAIGAWLGV
SMLPFLILVSAVLGSIVGVVLMRMRGESHPFAFGPYIAIAGIIALLWGNDIMSWYLNMYKV

Nucleotide


Download         Length: 906 bp        

>NTDB_id=631659 LP123_RS10490 WP_115369272.1 2053485..2054390(+) (pilD) [Moraxella bovis strain SAM102602]
ATGAATTGCTTTACTTTTTTATCAGAAAATTTATATATAGCACTTGCCCTAGCTGGACTGCTGGGGCTTTGTGTTGGTTC
ATTCTTAAATGTGGTGATTCACCGTACGCCACTTATTATGAATCGTGAATGGCGTAAAGATACGGCATGGTTTTTAGGCA
CTCAATCCGACCTTAACCCCAAGCATGTCAACCCCATTCAAGATGTTATCGCCAATGACATACCCATTAGCCTATCCTTT
CCGCCCTCTCGTTGTCCCAAATGCAACCACCAAATCCGTGCTTATGAAAACATTCCTGTATTAAGCTGGCTCATCCTATT
GCGTGGTAAATGCTCTGGCTGTGGCAACCCCATTAGCATGCGTTATCCATTGGTGGAACTCATCACTGCCTTACTGTCCG
TTTTGGTGATTTATACACTTGGGGCAAATATCGCAGGTGCTTTGGGGCTTATCTACCTGTGGATACTTATTGCTTTAACT
GGCATTGATTTTGATACTCAGCTACTGCCTGATCGTTTGGTTTTTCCGCTAGGCATGATGGGTCTTATGGCAAACACCCA
AAACATCTTTACTTCGGTCAGCTCTGCGGTATGGGGCGGACTGCTTGGTTTTTTATCCTTTTGGTCGGTTGCCAAACTCT
ATGCACTCATCACCAAAAAAGACGGCATGGGGGCAGGCGATTTTAAACTCTTAGGGGCGATTGGAGCGTGGCTTGGCGTG
AGCATGTTACCCTTTTTGATTCTTGTATCTGCTGTGTTGGGCTCTATCGTGGGCGTGGTGTTGATGAGAATGCGTGGCGA
AAGCCATCCCTTTGCCTTTGGTCCTTATATCGCCATTGCAGGTATCATCGCCCTATTATGGGGCAACGACATCATGAGTT
GGTATTTAAATATGTACAAAGTGTAA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(20-139)

Type IV leader peptidase family (Peptidase_A24)

(151-258)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Acinetobacter nosocomialis M2

52.448

95.017

0.498
  pilD Acinetobacter baumannii D1279779

52.448

95.017

0.498
  pilD Vibrio cholerae strain A1552

46.503

95.017

0.442
  pilD Vibrio campbellii strain DS40M4

43.253

96.013

0.415
  pilD Neisseria gonorrhoeae MS11

45.756

90.033

0.412