Detailed information NTG0631562

Bioinformatically predicted

Overview

• Name: pilC
• Type: Machinery gene
• Locus tag: LP117_RS07535
• Genome accession: NZ_CP087806
• Coordinates: 1487725..1488948 (+)
• Length: 407 a.a.
• NCBI ID: WP_078273700.1
• Uniprot ID: A0A1T0A5T8
• Organism: Moraxella bovis strain SAM57939
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1482725..1493948

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LP117_RS07525 (LP117_07475)	-	1483920..1485242 (-)	1323	WP_264675926.1	leucine-rich repeat domain-containing protein	-
LP117_RS07530 (LP117_07480)	recG	1485285..1487378 (-)	2094	WP_264684350.1	ATP-dependent DNA helicase RecG	-
LP117_RS07535 (LP117_07485)	pilC	1487725..1488948 (+)	1224	WP_078273700.1	type II secretion system F family protein	Machinery gene
LP117_RS07540 (LP117_07490)	pilD	1488948..1489853 (+)	906	WP_115369272.1	prepilin peptidase	Machinery gene
LP117_RS07550 (LP117_07500)	glnD	1490097..1492874 (+)	2778	WP_264675929.1	[protein-PII] uridylyltransferase	-
LP117_RS07555 (LP117_07505)	-	1492932..1493780 (+)	849	WP_078273701.1	WG repeat-containing protein	-

Sequence

Protein

• Length: 407 a.a.
• Molecular weight: 44975.19 Da
• Isoelectric Point: 9.4630

>NTDB_id=631562 LP117_RS07535 WP_078273700.1 1487725..1488948(+) (pilC) [Moraxella bovis strain SAM57939]
MAKVATEQLIDFKYSGTNRRGQNVKGELTAKSLELARAQLRKQGIVVQDVRQKSKPLFQIKKSIKAIDIAIFVRQLATMM
KAGVPLTQAFEIVADSLDNPSMKEIVLKVKADIEAGSNFATALRKHPKYFDDLFCSLVESGEQSGALETMLERVATYKEK
SEMLKAKIKKAMKYPIAVIIVAIIVTAILLVKVVPVFADMFAGFGAELPAFTQMVVNMSNWMVKYYLVFFIALAILVVSF
TQAKLRSQKFRNFLDRLALKLPIFGNIVYQAIIARFCRTLSTTFAAGVPLIDALDSTAGATNNIVFYEATQRVKEDVATG
QQMQFAMRNTNLFPSMVLQMVGIGEEAGSLEEMLDKAATFYENEVDNAVDGLTSLMEPMIMAFLGVVIGGLVIAMYLPIF
MMGDVIG

Nucleotide

• Length: 1224 bp

>NTDB_id=631562 LP117_RS07535 WP_078273700.1 1487725..1488948(+) (pilC) [Moraxella bovis strain SAM57939]
ATGGCAAAAGTAGCAACTGAACAGTTAATTGATTTTAAATACTCTGGCACCAATAGACGTGGGCAGAACGTCAAAGGCGA
GCTAACCGCCAAAAGTCTTGAACTAGCTCGTGCTCAGCTTAGAAAGCAGGGCATTGTTGTCCAAGACGTTAGACAAAAAT
CCAAGCCCCTTTTTCAAATCAAAAAATCCATCAAAGCGATTGATATTGCTATTTTTGTGCGTCAGCTTGCCACGATGATG
AAAGCCGGTGTGCCACTGACCCAAGCCTTTGAGATTGTGGCTGATTCGCTTGACAATCCCAGCATGAAAGAGATTGTATT
AAAAGTTAAGGCTGACATCGAAGCGGGAAGTAACTTTGCCACTGCTCTGCGTAAGCACCCCAAATACTTTGATGACCTGT
TTTGTTCATTAGTCGAGTCTGGTGAGCAGTCAGGTGCGTTAGAGACCATGCTTGAACGTGTCGCTACCTATAAAGAAAAA
AGCGAAATGCTCAAAGCCAAAATTAAAAAAGCAATGAAATATCCGATTGCGGTGATCATTGTTGCTATTATTGTTACTGC
CATTCTATTGGTTAAGGTAGTTCCAGTCTTTGCTGATATGTTTGCTGGTTTTGGTGCTGAATTACCTGCCTTTACCCAGA
TGGTCGTTAATATGTCTAACTGGATGGTTAAATATTATTTGGTATTTTTTATTGCACTAGCAATCCTTGTTGTGTCTTTT
ACCCAAGCTAAGTTGCGTAGCCAAAAATTTAGAAATTTCTTAGATAGATTGGCTCTTAAACTACCCATATTTGGTAATAT
TGTTTATCAAGCCATCATCGCCCGTTTTTGTCGCACCCTCTCCACCACTTTTGCTGCTGGCGTACCTTTGATTGACGCCC
TAGATTCTACCGCAGGGGCAACCAATAATATTGTATTTTATGAAGCCACACAGCGTGTCAAAGAAGATGTCGCCACCGGT
CAGCAAATGCAGTTTGCCATGCGTAACACTAACCTATTTCCCAGCATGGTACTTCAAATGGTCGGCATTGGCGAAGAGGC
AGGTAGTTTGGAAGAAATGCTTGATAAGGCTGCCACTTTCTATGAGAATGAGGTGGATAATGCTGTTGATGGCTTAACCA
GTTTGATGGAACCCATGATCATGGCATTTTTAGGCGTGGTTATTGGTGGTTTAGTTATCGCCATGTATCTACCAATCTTC
ATGATGGGCGATGTTATCGGATGA

Domains

Predicted by InterproScan.

• Type II secretion system (T2SS), protein F (T2SSF) (72-195)

• Type II secretion system (T2SS), protein F (T2SSF) (276-398)

3D structure

• AlphaFold DB: A0A1T0A5T8

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilC	Acinetobacter baumannii D1279779	65.931	100	0.661
pilC	Acinetobacter baylyi ADP1	62.99	100	0.631
pilC	Pseudomonas stutzeri DSM 10701	61.772	97.052	0.6
pilC	Legionella pneumophila strain ERS1305867	55.89	98.034	0.548
pilG	Neisseria meningitidis 44/76-A	48.177	94.349	0.455
pilG	Neisseria gonorrhoeae MS11	48.177	94.349	0.455
pilC	Vibrio cholerae strain A1552	45.098	100	0.452
pilC	Vibrio campbellii strain DS40M4	42.611	99.754	0.425
pilC	Thermus thermophilus HB27	37.783	97.543	0.369