Detailed information    

insolico Bioinformatically predicted

Overview

Name   letA   Type   Regulator
Locus tag   N5B54_RS09815 Genome accession   NZ_CP104592
Coordinates   2057222..2057878 (+) Length   218 a.a.
NCBI ID   WP_000611328.1    Uniprot ID   P66797
Organism   Escherichia coli strain EC5931     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 2052222..2062878
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N5B54_RS09785 (N5B54_09760) dcyD 2053101..2054087 (+) 987 WP_001128215.1 D-cysteine desulfhydrase -
  N5B54_RS09790 (N5B54_09765) tcyL 2054102..2054770 (+) 669 WP_001158220.1 cystine ABC transporter permease -
  N5B54_RS09795 (N5B54_09770) tcyN 2054767..2055519 (+) 753 WP_001273000.1 L-cystine ABC transporter ATP-binding protein TcyN -
  N5B54_RS09800 (N5B54_09775) sdiA 2055749..2056471 (+) 723 WP_001154255.1 transcriptional regulator SdiA -
  N5B54_RS09805 (N5B54_09780) yecF 2056539..2056763 (-) 225 WP_000106474.1 DUF2594 family protein YecF -
  N5B54_RS09810 (N5B54_09785) yecU 2056750..2056926 (-) 177 WP_001307856.1 protein YecU -
  N5B54_RS09815 (N5B54_09790) letA 2057222..2057878 (+) 657 WP_000611328.1 UvrY/SirA/GacA family response regulator transcription factor Regulator
  N5B54_RS09820 (N5B54_09795) uvrC 2057875..2059707 (+) 1833 WP_001283421.1 excinuclease ABC subunit UvrC Machinery gene
  N5B54_RS09825 (N5B54_09800) pgsA 2059764..2060312 (+) 549 WP_001160187.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  N5B54_RS09845 (N5B54_09820) - 2061306..2061587 (+) 282 WP_071529678.1 hypothetical protein -
  N5B54_RS09850 (N5B54_09825) - 2061777..2061917 (-) 141 WP_000078920.1 Hok/Gef family protein -
  N5B54_RS09855 (N5B54_09830) - 2062108..2062368 (-) 261 WP_000488108.1 ogr/Delta-like zinc finger family protein -

Sequence

Protein


Download         Length: 218 a.a.        Molecular weight: 23862.63 Da        Isoelectric Point: 6.9614

>NTDB_id=631479 N5B54_RS09815 WP_000611328.1 2057222..2057878(+) (letA) [Escherichia coli strain EC5931]
MINVLLVDDHELVRAGIRRILEDIKGIKVVGEASCGEDAVKWCRANAVDVVLMDMSMPGIGGLEATRKIARSTADVKIIM
LTVHTENPLPAKVMQAGAAGYLSKGAAPQEVVSAIRSVYSGQRYIASDIAQQMALSQIEPEKTESPFASLSERELQIMLM
ITKGQKVNEISEQLNLSPKTVNSYRYRMFSKLNIHGDVELTHLAIRHGLCNAETLSSQ

Nucleotide


Download         Length: 657 bp        

>NTDB_id=631479 N5B54_RS09815 WP_000611328.1 2057222..2057878(+) (letA) [Escherichia coli strain EC5931]
TTGATCAACGTTCTACTTGTTGATGACCACGAACTGGTGCGCGCAGGGATACGACGCATTCTGGAAGATATAAAGGGTAT
AAAAGTCGTCGGTGAGGCATCGTGCGGTGAAGACGCCGTTAAATGGTGCCGGGCAAATGCCGTTGACGTGGTGCTAATGG
ACATGAGTATGCCGGGCATTGGCGGTCTTGAGGCGACGCGTAAAATCGCGCGTTCCACAGCTGATGTCAAAATCATCATG
CTTACCGTCCATACAGAAAACCCTTTACCAGCGAAAGTCATGCAGGCCGGAGCTGCGGGCTACCTCAGCAAAGGCGCGGC
TCCGCAGGAAGTCGTGAGTGCGATTCGTTCTGTCTATTCAGGGCAGCGTTACATTGCTTCTGATATCGCTCAACAAATGG
CGTTAAGCCAGATCGAACCAGAAAAAACAGAAAGCCCATTTGCCAGTTTGTCTGAACGTGAATTGCAGATTATGCTGATG
ATCACCAAGGGCCAGAAGGTCAATGAGATCTCAGAACAGCTCAATCTCAGTCCGAAAACGGTGAACAGCTACCGCTATCG
TATGTTCAGTAAACTAAACATTCATGGCGATGTTGAGCTGACTCACCTGGCAATTCGCCATGGTCTGTGTAATGCGGAGA
CATTATCAAGTCAGTGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(149-204)

Response regulator receiver domain (Response_reg)

(4-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P66797

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  letA Legionella pneumophila str. Paris

50.725

94.954

0.482
  letA Legionella pneumophila strain ERS1305867

50.725

94.954

0.482