Detailed information    

insolico Bioinformatically predicted

Overview

Name   letA   Type   Regulator
Locus tag   N5878_RS20880 Genome accession   NZ_CP104590
Coordinates   4479895..4480518 (-) Length   207 a.a.
NCBI ID   WP_003111192.1    Uniprot ID   A0A0H2ZJZ4
Organism   Pseudomonas aeruginosa strain WTJH36     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 4474895..4485518
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N5878_RS20855 (N5878_20855) - 4475677..4476600 (-) 924 WP_003115797.1 choline ABC transporter substrate-binding protein -
  N5878_RS20860 (N5878_20860) betC 4476617..4478128 (-) 1512 WP_003158558.1 choline-sulfatase -
  N5878_RS20865 (N5878_20865) - 4478241..4479155 (+) 915 WP_003111194.1 choline sulfate utilization transcriptional regulator -
  N5878_RS20870 (N5878_20870) - 4479166..4479543 (+) 378 WP_023083577.1 DOPA 4,5-dioxygenase family protein -
  N5878_RS20875 (N5878_20875) - 4479522..4479887 (-) 366 WP_003097330.1 Hpt domain-containing protein -
  N5878_RS20880 (N5878_20880) letA 4479895..4480518 (-) 624 WP_003111192.1 response regulator transcription factor Regulator
  N5878_RS20885 (N5878_20885) trpA 4480704..4481510 (-) 807 WP_003097337.1 tryptophan synthase subunit alpha -
  N5878_RS20890 (N5878_20890) trpB 4481507..4482715 (-) 1209 WP_003097340.1 tryptophan synthase subunit beta -
  N5878_RS20895 (N5878_20895) trpI 4482819..4483706 (+) 888 WP_012613425.1 trpBA operon transcriptional activator TrpI -
  N5878_RS20900 (N5878_20900) - 4483807..4484022 (+) 216 WP_003097345.1 dodecin -
  N5878_RS20905 (N5878_20905) - 4484206..4484433 (+) 228 WP_003097347.1 DUF1161 domain-containing protein -

Sequence

Protein


Download         Length: 207 a.a.        Molecular weight: 22859.66 Da        Isoelectric Point: 10.1491

>NTDB_id=631405 N5878_RS20880 WP_003111192.1 4479895..4480518(-) (letA) [Pseudomonas aeruginosa strain WTJH36]
MSKVLIVDDHPAIRLAVRLLFERDGFTIVGEADNGAEALQVARKKSPDLAILDIGIPKIDGLEVIARLKSLKLDTKVLVL
TRQNPAQFAPRCLQAGAMGFVSKRENLSELLLAAKAVLAGYIHFPTGALRSINQQSRDNEARMLESLSDREMTVLQYLAN
GNTNKAIAQQLFLSEKTVSTYKSRIMLKLNAHSLAGLIDFARRHELI

Nucleotide


Download         Length: 624 bp        

>NTDB_id=631405 N5878_RS20880 WP_003111192.1 4479895..4480518(-) (letA) [Pseudomonas aeruginosa strain WTJH36]
ATGAGTAAGGTGCTGATCGTCGATGATCATCCCGCTATCCGCCTGGCCGTGCGCTTGCTGTTCGAGCGCGACGGTTTCAC
CATCGTCGGCGAGGCCGACAACGGTGCCGAAGCCCTGCAGGTAGCCCGCAAGAAGTCTCCCGACCTGGCCATCCTGGACA
TCGGCATCCCCAAGATCGACGGTCTCGAAGTGATAGCCCGCCTGAAGTCCCTGAAGCTGGACACCAAGGTCCTGGTCCTG
ACCCGGCAGAATCCGGCGCAGTTCGCCCCGCGCTGCCTGCAGGCCGGCGCCATGGGCTTCGTCAGCAAAAGGGAAAACCT
CTCCGAGCTGCTGCTCGCCGCCAAGGCCGTGCTGGCCGGCTACATCCACTTCCCCACCGGGGCGTTGCGCAGCATCAACC
AGCAGAGCCGCGACAACGAGGCCCGCATGCTGGAAAGCCTTTCCGACCGCGAGATGACCGTGCTGCAGTACCTGGCCAAC
GGCAACACCAACAAGGCCATCGCCCAGCAGCTGTTCCTCAGCGAGAAAACCGTGAGCACCTACAAGTCACGCATCATGCT
GAAACTCAACGCCCATTCCCTGGCCGGCCTGATCGATTTCGCCCGCCGCCACGAGCTGATCTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-113)

Bacterial regulatory proteins, luxR family (GerE)

(145-201)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZJZ4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  letA Legionella pneumophila str. Paris

35.377

100

0.362
  letA Legionella pneumophila strain ERS1305867

35.377

100

0.362