Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   LPS07_RS17610 Genome accession   NZ_CP087716
Coordinates   3654546..3655958 (+) Length   470 a.a.
NCBI ID   WP_032005832.1    Uniprot ID   A0A010JV14
Organism   Acinetobacter pittii strain AP2044     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 3649546..3660958
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LPS07_RS17590 (LPS07_17590) thrC 3649801..3650940 (+) 1140 WP_002048893.1 threonine synthase -
  LPS07_RS17595 (LPS07_17595) pbpG 3651048..3652094 (-) 1047 WP_230445089.1 D-alanyl-D-alanine endopeptidase PBP7/8 -
  LPS07_RS17600 (LPS07_17600) gacA 3652307..3652942 (+) 636 WP_002121174.1 response regulator -
  LPS07_RS17605 (LPS07_17605) pilS 3652953..3654521 (+) 1569 WP_005065716.1 sensor histidine kinase Regulator
  LPS07_RS17610 (LPS07_17610) pilR 3654546..3655958 (+) 1413 WP_032005832.1 sigma-54-dependent transcriptional regulator Regulator
  LPS07_RS17615 (LPS07_17615) ctpA 3655962..3657146 (-) 1185 WP_002121269.1 S41 family peptidase -
  LPS07_RS17620 (LPS07_17620) gpmI 3657162..3658709 (-) 1548 WP_005065710.1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase -
  LPS07_RS17625 (LPS07_17625) lptG 3658836..3659906 (-) 1071 WP_002121203.1 LPS export ABC transporter permease LptG -

Sequence

Protein


Download         Length: 470 a.a.        Molecular weight: 52590.61 Da        Isoelectric Point: 6.3452

>NTDB_id=631229 LPS07_RS17610 WP_032005832.1 3654546..3655958(+) (pilR) [Acinetobacter pittii strain AP2044]
MAEQQPLVLLVDDEEDLCLLMQMTLARMGIKTHLAYRVEQAKQLFTQFHYDACLTDLNLPDGSGLELVQHVSQTYPHTPI
AVLTAYGNMDIAIAALKAGAFDFVSKPINQIHLDQLLKKALNQPKPEHEFGETTLENDLLIGRSPPIQNLRTAIKKIARS
QAPVFVTGESGTGKEVVANLIHRLSNRSEGPFIAINCGAIPTELMESELFGHKKGSFTGATQDKQGLILSAHGGSLFLDE
IAELPLSMQVKLLRAVQEKKIRPVGSDQEIDVDFRVISASHQDLDLLVQQGKFRQDLFFRIHVMDIMLPPLRDRGGDILL
LANHFIQKVCTEWGVSSKQLTASAETYLLQQDFPGNVRELRNMIERAITLSDDEPIDLTHLAPPPRGSSVSPQIVTKQLN
QTPAVQTHPKFPMEGLERYLENIEKDILLNALNMTHWNRTLAAKKLGMTFRSLRYRLKKFGLDTEMGEEV

Nucleotide


Download         Length: 1413 bp        

>NTDB_id=631229 LPS07_RS17610 WP_032005832.1 3654546..3655958(+) (pilR) [Acinetobacter pittii strain AP2044]
ATGGCAGAACAGCAACCACTCGTTTTGCTTGTAGACGATGAAGAAGATTTGTGCCTGTTAATGCAAATGACTCTTGCACG
AATGGGGATTAAGACACATCTTGCTTATCGGGTTGAACAGGCCAAACAGCTCTTTACTCAGTTTCATTACGATGCGTGCT
TGACCGATTTAAATCTACCTGATGGTAGTGGTTTAGAATTGGTTCAACATGTTTCTCAAACTTACCCACACACACCCATT
GCAGTCTTAACTGCATACGGCAATATGGATATTGCAATTGCAGCACTAAAAGCGGGAGCTTTTGATTTTGTCAGCAAACC
GATTAACCAAATTCATTTAGATCAATTGTTAAAAAAGGCGCTTAACCAGCCAAAACCAGAGCATGAGTTCGGTGAAACAA
CATTAGAAAATGACTTATTAATTGGGCGTTCACCACCTATACAAAACTTACGGACAGCTATTAAAAAAATAGCCCGCTCC
CAAGCTCCTGTATTTGTTACAGGCGAGTCTGGTACGGGTAAAGAAGTTGTTGCGAATCTGATTCACCGATTAAGCAACCG
CAGTGAAGGACCATTTATTGCAATTAACTGTGGAGCAATCCCAACTGAGCTCATGGAAAGTGAACTTTTCGGGCATAAAA
AAGGGAGCTTTACTGGCGCGACTCAAGACAAACAAGGTCTGATTTTATCGGCACACGGCGGCAGTTTATTTTTAGATGAA
ATTGCCGAATTGCCTTTAAGTATGCAAGTTAAATTGCTTCGGGCAGTACAAGAGAAAAAGATTCGCCCTGTAGGTTCAGA
TCAGGAAATTGATGTCGATTTTCGAGTAATCAGTGCCAGTCACCAAGACTTAGATTTATTAGTTCAACAAGGTAAATTCC
GTCAGGACTTATTTTTCCGTATTCATGTTATGGATATTATGTTGCCGCCACTACGTGACCGTGGTGGAGATATTTTGCTA
TTGGCCAATCATTTTATTCAAAAGGTTTGTACGGAATGGGGAGTTTCAAGCAAGCAATTAACGGCGAGCGCTGAAACTTA
CTTATTGCAGCAAGACTTTCCGGGTAATGTTCGTGAATTAAGAAATATGATTGAGCGAGCTATTACTTTAAGTGATGATG
AGCCCATTGATTTAACACACTTAGCACCTCCTCCTAGAGGCAGTAGCGTGAGCCCGCAAATCGTAACGAAACAACTAAAT
CAAACACCGGCTGTTCAGACTCACCCAAAATTTCCAATGGAAGGTTTAGAACGCTACTTAGAAAATATCGAAAAAGATAT
TTTACTGAATGCGCTAAATATGACTCATTGGAATCGAACTTTGGCAGCTAAAAAGCTAGGAATGACATTCCGTTCTTTGC
GCTATCGGCTCAAAAAGTTTGGCTTAGATACTGAAATGGGAGAGGAAGTATAA

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(420-460)

Response regulator receiver domain (Response_reg)

(8-116)

Sigma-54 interaction domain (Sigma54_activat)

(140-306)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A010JV14

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Acinetobacter baumannii strain A118

85.835

100

0.864
  pilR Pseudomonas aeruginosa PAK

51.198

97.66

0.5