Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   LPS07_RS02025 Genome accession   NZ_CP087716
Coordinates   427660..428289 (-) Length   209 a.a.
NCBI ID   WP_016806074.1    Uniprot ID   -
Organism   Acinetobacter pittii strain AP2044     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 422660..433289
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LPS07_RS01990 (LPS07_01990) mlaE 422993..423769 (+) 777 WP_002117010.1 lipid asymmetry maintenance ABC transporter permease subunit MlaE -
  LPS07_RS01995 (LPS07_01995) - 423769..424449 (+) 681 WP_005067241.1 outer membrane lipid asymmetry maintenance protein MlaD -
  LPS07_RS02000 (LPS07_02000) - 424476..425117 (+) 642 WP_002116826.1 MlaC/ttg2D family ABC transporter substrate-binding protein -
  LPS07_RS02005 (LPS07_02005) - 425129..425416 (+) 288 WP_005078357.1 STAS domain-containing protein -
  LPS07_RS02010 (LPS07_02010) - 425489..426502 (-) 1014 WP_002116978.1 magnesium and cobalt transport protein CorA -
  LPS07_RS02015 (LPS07_02015) - 426661..427242 (+) 582 WP_005067248.1 TIGR00730 family Rossman fold protein -
  LPS07_RS02020 (LPS07_02020) mutT 427257..427658 (+) 402 WP_005078355.1 NUDIX hydrolase -
  LPS07_RS02025 (LPS07_02025) comF 427660..428289 (-) 630 WP_016806074.1 ComF family protein Machinery gene
  LPS07_RS02030 (LPS07_02030) recG 428282..430327 (-) 2046 WP_069119500.1 ATP-dependent DNA helicase RecG -
  LPS07_RS02035 (LPS07_02035) - 430348..431163 (+) 816 WP_230445126.1 NAD-dependent epimerase/dehydratase family protein -
  LPS07_RS02040 (LPS07_02040) - 431243..432226 (+) 984 WP_032057360.1 putative solute-binding protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24556.76 Da        Isoelectric Point: 9.9657

>NTDB_id=631201 LPS07_RS02025 WP_016806074.1 427660..428289(-) (comF) [Acinetobacter pittii strain AP2044]
MFNFLNFQHLIQLFSPCSLCELGMREKYSLCKDCWEQLPWLKQTIQRNNHSVLVACNYAYPVNRIIQQFKYEQKLHYQIL
LGEILKQLKFPKVQAIVPMPISNQRLIERGFNQSLLLANILSRHLKIPVWQPIQRLNEHSQKGLTRLERFENIEQQFLPH
HQEKRRYRRVLIIDDVITTGSSVHALSQALKQLGCTSIHTVCLAATPKS

Nucleotide


Download         Length: 630 bp        

>NTDB_id=631201 LPS07_RS02025 WP_016806074.1 427660..428289(-) (comF) [Acinetobacter pittii strain AP2044]
ATGTTTAATTTTTTAAACTTCCAACATCTTATTCAGTTATTTTCACCTTGCTCATTGTGCGAGTTAGGCATGCGAGAAAA
ATACTCGCTCTGTAAAGACTGTTGGGAACAGCTACCTTGGCTTAAACAAACGATTCAACGTAATAATCACTCTGTTCTTG
TGGCTTGTAATTATGCTTATCCGGTTAACCGGATTATTCAGCAGTTTAAATATGAACAAAAGTTACATTATCAGATCTTA
TTAGGTGAAATTTTAAAACAATTAAAATTTCCCAAGGTACAAGCGATCGTACCTATGCCCATTTCCAATCAACGTTTAAT
CGAGCGTGGTTTCAATCAATCATTACTACTTGCCAATATCTTAAGCAGACACTTAAAAATACCTGTTTGGCAACCGATTC
AACGTTTAAACGAGCACTCTCAAAAAGGGCTTACTCGGCTAGAACGCTTTGAAAATATAGAACAACAATTTTTACCTCAT
CATCAAGAGAAACGACGTTATCGCCGCGTTCTCATTATTGATGACGTGATAACCACGGGAAGCTCTGTTCATGCGCTCAG
TCAGGCACTTAAACAATTAGGCTGCACATCCATTCATACCGTGTGCCTAGCAGCGACGCCGAAGAGTTAG

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(114-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baumannii strain A118

83.254

100

0.833
  comF Acinetobacter baumannii D1279779

82.297

100

0.823