Detailed information NTG0631177

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: LPW13_RS11670
• Genome accession: NZ_CP087715
• Coordinates: 2780826..2782223 (+)
• Length: 465 a.a.
• NCBI ID: WP_230435584.1
• Uniprot ID: -
• Organism: Microbulbifer celer strain KCTC 12973
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 2775826..2787223

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LPW13_RS11655 (LPW13_11655)	-	2776285..2777229 (+)	945	WP_268932638.1	outer membrane protein assembly factor BamD	-
LPW13_RS11660 (LPW13_11660)	-	2777339..2778970 (-)	1632	WP_230435581.1	NAD+ synthase	-
LPW13_RS11665 (LPW13_11665)	-	2779107..2780786 (+)	1680	WP_230435583.1	PAS domain-containing sensor histidine kinase	-
LPW13_RS11670 (LPW13_11670)	pilR	2780826..2782223 (+)	1398	WP_230435584.1	sigma-54 dependent transcriptional regulator	Regulator
LPW13_RS11675 (LPW13_11675)	-	2782332..2782904 (+)	573	WP_230435585.1	GspH/FimT family pseudopilin	-
LPW13_RS11680 (LPW13_11680)	-	2782905..2783351 (-)	447	WP_277611198.1	type IV pilin protein	-
LPW13_RS11690 (LPW13_11690)	-	2783429..2786833 (-)	3405	WP_230435586.1	PilC/PilY family type IV pilus protein	-

Sequence

Protein

• Length: 465 a.a.
• Molecular weight: 51915.19 Da
• Isoelectric Point: 5.8138

>NTDB_id=631177 LPW13_RS11670 WP_230435584.1 2780826..2782223(+) (pilR) [Microbulbifer celer strain KCTC 12973]
MAGSQPLALVVDDEPDICELLTMTLSRMDVRTDIAMSVTEAKRRLAEKQYDFCLTDMRLPDGDGLELVKDIQQRPLDRAL
PVAVITAHGNMDTAVAALKLGAFDFVSKPINLKPLRALVQLALRLGEEKRSPQTEWHALLQGQTLETRKLQEHIEQLSRT
DAPIHIRGEHGAGKELAAREIHRFSPRSSAPFVVVNCSAEDPAELEHSLFGNHTEGPESGPLMAANGGTLYLDDITELPE
ALQAKLLQCIQNKKIYSPSANREHALDLRIISATHKSLVDAATAHRIRSDLYFRLNVIELVVPPLRERQKDIPMLARSVL
REVAASSGNPTPRITQDALNTLQNYSFPANLRQLENILQRAFALCDGRTIRPEDLQLDPVSAKLHENSGLMEEADGVRLG
GNDMYPGQFSSSTFESLDEFLQDIEKKALEKALEETRWNRTAAAQKLGISFRSLRYRLKKLDMED

Nucleotide

• Length: 1398 bp

>NTDB_id=631177 LPW13_RS11670 WP_230435584.1 2780826..2782223(+) (pilR) [Microbulbifer celer strain KCTC 12973]
ATGGCCGGAAGCCAACCTCTAGCACTCGTCGTCGACGACGAGCCCGATATCTGCGAACTGCTGACGATGACTCTGAGCCG
GATGGACGTACGCACTGACATCGCCATGTCCGTGACGGAGGCCAAACGGCGTTTGGCGGAAAAGCAGTACGATTTCTGCC
TCACGGACATGCGCCTGCCGGACGGTGATGGACTCGAGCTGGTAAAGGACATCCAGCAGCGCCCCCTGGATCGGGCTCTG
CCGGTGGCAGTGATCACCGCACACGGCAATATGGATACCGCCGTCGCCGCTCTGAAACTGGGTGCGTTCGATTTCGTCAG
CAAACCGATCAATCTCAAACCCCTGCGTGCGCTGGTTCAGCTGGCATTGCGCCTCGGGGAAGAAAAACGCTCACCGCAGA
CCGAGTGGCATGCCCTGCTTCAGGGACAGACTCTTGAAACCCGGAAGCTTCAGGAACATATAGAACAGCTCTCACGTACG
GATGCACCAATTCATATTCGCGGAGAGCACGGCGCGGGTAAAGAGCTGGCAGCACGGGAGATTCATCGATTCAGCCCCAG
GTCAAGCGCCCCCTTTGTCGTCGTCAATTGCAGCGCCGAAGACCCAGCCGAACTCGAACACAGCCTGTTTGGCAACCACA
CAGAAGGCCCAGAATCCGGCCCCCTGATGGCTGCCAACGGCGGCACACTATATCTCGATGACATCACCGAGCTGCCTGAG
GCACTGCAGGCAAAACTTTTGCAGTGCATTCAAAACAAAAAGATTTACTCACCCAGTGCCAACCGGGAACATGCGCTGGA
TCTTCGCATTATCAGTGCCACCCACAAAAGTCTGGTGGATGCGGCCACAGCTCACCGGATACGCAGCGATCTCTATTTCC
GGCTCAATGTCATCGAACTGGTAGTTCCACCACTGAGAGAGCGCCAGAAAGACATCCCCATGCTGGCCAGAAGTGTTTTG
CGAGAGGTGGCAGCATCCTCAGGTAACCCAACGCCCCGAATCACTCAGGACGCCCTCAACACTCTGCAGAATTATTCCTT
CCCCGCCAACCTGAGGCAACTGGAAAACATTCTGCAAAGAGCCTTCGCGCTCTGCGATGGCAGAACAATCAGACCGGAAG
ATTTACAACTGGACCCGGTCTCAGCAAAGCTGCATGAAAATTCCGGATTAATGGAAGAGGCAGACGGTGTCAGGCTGGGG
GGCAATGATATGTACCCCGGTCAGTTCTCATCTTCAACGTTTGAATCGCTGGATGAATTCCTGCAGGACATCGAGAAAAA
GGCGCTGGAAAAAGCGCTGGAAGAAACCCGCTGGAACAGGACGGCGGCGGCGCAGAAGTTGGGGATCAGCTTTCGGTCTT
TACGGTATCGGCTGAAGAAACTGGATATGGAAGATTAG

Domains

Predicted by InterproScan.

• Bacterial regulatory protein, Fis family (HTH_8) (421-461)

• Sigma-54 interaction domain (Sigma54_activat) (142-300)

• Response regulator receiver domain (Response_reg) (9-119)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	48.832	100	0.495
pilR	Acinetobacter baumannii strain A118	40.592	100	0.413