Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   LO767_RS02930 Genome accession   NZ_CP087705
Coordinates   643490..645082 (-) Length   530 a.a.
NCBI ID   WP_233049123.1    Uniprot ID   -
Organism   Halopseudomonas aestusnigri strain GOM5     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 638490..650082
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LO767_RS02915 (LO767_02915) - 639824..640768 (+) 945 WP_233048336.1 IS5 family transposase -
  LO767_RS02920 (LO767_02920) thiO 640998..642092 (+) 1095 WP_233049121.1 glycine oxidase ThiO -
  LO767_RS02925 (LO767_02925) pilR 642108..643451 (-) 1344 WP_233049122.1 sigma-54 dependent transcriptional regulator Regulator
  LO767_RS02930 (LO767_02930) pilS 643490..645082 (-) 1593 WP_233049123.1 ATP-binding protein Regulator
  LO767_RS02935 (LO767_02935) - 645063..645299 (-) 237 WP_233049124.1 PP0621 family protein -
  LO767_RS02940 (LO767_02940) - 645428..647059 (+) 1632 WP_233049125.1 NAD+ synthase -
  LO767_RS02945 (LO767_02945) - 647228..648220 (-) 993 WP_228245851.1 outer membrane protein assembly factor BamD -
  LO767_RS02950 (LO767_02950) rluD 648399..649358 (+) 960 WP_088275712.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -

Sequence

Protein


Download         Length: 530 a.a.        Molecular weight: 59236.24 Da        Isoelectric Point: 7.2013

>NTDB_id=631086 LO767_RS02930 WP_233049123.1 643490..645082(-) (pilS) [Halopseudomonas aestusnigri strain GOM5]
MNTTTAERIDSQRPRILRLYNLYRVILGFGLTLLTSSSLREGVLSLSNPEVYAQASWIYLFINVLIALSLHKGRRDIHLF
VLAVLDITLLGIIFYAAGGIGSGFGNLLIIPVAIGNVLLHGRIGLLLPAMSSLVLIYLTFFLSLTHPYIGQNYLQAGVLG
AIYFAVALFVQRVTRRLYLSEILAREQAASLASLEQLNQLIIQRMRTGIMVVSAENRILTSNEACSQMLDRDVPQGERLD
KIAPELEQRLRQWQRNPSVRARSFHSFNGSTELMANFKHLGSQTGDNILVFLDDNTQVAQQAQQLKLASLGRLTASIAHE
IRNPLGAISHAAQLLAESEQLSAQDQRLTEIIQQHSQRMNRVIETVLELSRRRPSEPQLVDLALWVSHFAGDFRSAHPPT
DALECDIEKEGILTRIDPNQMTQVLNNLCNNALRYSGEAGQARTIQLKLYVRPDTELPVLEVIDHGPGIAEEHLGHIFEP
FYTTEATGTGLGLYISRELCESNQARLECDRVQPHGCCMRITFAHPKRLV

Nucleotide


Download         Length: 1593 bp        

>NTDB_id=631086 LO767_RS02930 WP_233049123.1 643490..645082(-) (pilS) [Halopseudomonas aestusnigri strain GOM5]
ATGAACACGACAACCGCTGAGCGGATCGACTCCCAGCGCCCTCGCATCCTGCGACTGTACAATCTGTATCGGGTCATTCT
CGGCTTCGGCCTGACCCTGCTGACCAGCTCGTCGCTGCGCGAGGGCGTGCTGTCCCTGAGCAACCCCGAGGTCTACGCTC
AGGCCAGCTGGATCTACCTGTTCATCAACGTGCTGATCGCGCTGTCACTGCACAAGGGCCGACGGGATATTCACCTGTTC
GTGCTGGCAGTGCTGGATATCACCCTGCTCGGCATCATCTTCTACGCCGCTGGAGGCATAGGCAGCGGCTTCGGCAACCT
GCTGATCATTCCGGTCGCAATCGGCAACGTGCTGCTGCATGGCCGTATCGGACTGCTGCTGCCGGCAATGTCCAGCCTGG
TGCTGATCTATCTGACGTTTTTCCTCAGCCTGACCCATCCCTACATCGGCCAGAACTACCTGCAGGCCGGCGTGCTGGGC
GCGATCTATTTTGCCGTCGCCCTGTTCGTCCAGCGCGTCACCCGCCGGCTGTACCTGTCGGAAATTCTGGCCCGCGAGCA
GGCCGCCAGTCTGGCCAGTCTGGAACAACTCAATCAGTTGATCATTCAGCGCATGCGCACCGGGATTATGGTGGTCAGCG
CCGAAAATCGAATTCTGACCAGCAACGAGGCCTGTTCTCAGATGCTCGACCGCGACGTGCCCCAGGGGGAGCGGCTGGAT
AAAATCGCGCCAGAGCTGGAGCAGCGACTGCGTCAGTGGCAGCGCAACCCCTCGGTCAGGGCGCGCTCATTCCACAGTTT
CAATGGCAGTACCGAGCTGATGGCCAATTTCAAACACCTCGGCAGCCAGACCGGCGACAATATTCTGGTGTTCCTGGACG
ACAACACCCAGGTCGCCCAGCAGGCACAGCAACTGAAACTGGCCTCGCTGGGCCGCCTGACCGCCAGCATTGCCCATGAG
ATACGCAATCCGCTGGGGGCAATCAGCCACGCGGCGCAACTGCTGGCCGAGTCCGAACAGTTGTCAGCTCAGGACCAACG
GTTGACAGAGATCATCCAGCAGCACTCCCAGCGCATGAACCGGGTCATTGAAACCGTGCTCGAACTCTCCCGCCGCCGCC
CCAGCGAGCCGCAACTGGTCGATCTGGCGCTGTGGGTCTCCCACTTCGCCGGCGATTTTCGCAGTGCCCATCCGCCAACC
GATGCGCTTGAGTGCGACATCGAGAAAGAGGGCATTCTGACCCGAATCGACCCCAACCAGATGACCCAGGTTCTCAACAA
CCTGTGTAATAACGCACTGCGTTACAGTGGCGAAGCGGGGCAAGCCCGCACCATCCAGCTCAAGCTGTATGTACGGCCGG
ACACCGAACTGCCGGTGCTGGAGGTCATTGATCATGGCCCGGGGATCGCCGAAGAACACCTGGGTCACATTTTCGAGCCC
TTCTATACCACCGAAGCCACCGGTACCGGCCTGGGCCTGTATATTTCCCGCGAACTGTGCGAAAGCAACCAGGCACGACT
CGAGTGCGACCGGGTGCAGCCCCACGGCTGCTGCATGCGCATCACCTTCGCGCACCCGAAACGACTGGTATGA

Domains

Predicted by InterproScan.

His Kinase A (phospho-acceptor) domain (HisKA)

(309-372)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(417-523)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Pseudomonas aeruginosa PAK

50.474

99.434

0.502