Detailed information NTG0631085

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: LO767_RS02925
• Genome accession: NZ_CP087705
• Coordinates: 642108..643451 (-)
• Length: 447 a.a.
• NCBI ID: WP_233049122.1
• Uniprot ID: -
• Organism: Halopseudomonas aestusnigri strain GOM5
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 637108..648451

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LO767_RS02910 (LO767_02910)	mqo	637882..639363 (-)	1482	WP_233049120.1	malate dehydrogenase (quinone)	-
LO767_RS02915 (LO767_02915)	-	639824..640768 (+)	945	WP_233048336.1	IS5 family transposase	-
LO767_RS02920 (LO767_02920)	thiO	640998..642092 (+)	1095	WP_233049121.1	glycine oxidase ThiO	-
LO767_RS02925 (LO767_02925)	pilR	642108..643451 (-)	1344	WP_233049122.1	sigma-54 dependent transcriptional regulator	Regulator
LO767_RS02930 (LO767_02930)	pilS	643490..645082 (-)	1593	WP_233049123.1	ATP-binding protein	Regulator
LO767_RS02935 (LO767_02935)	-	645063..645299 (-)	237	WP_233049124.1	PP0621 family protein	-
LO767_RS02940 (LO767_02940)	-	645428..647059 (+)	1632	WP_233049125.1	NAD+ synthase	-
LO767_RS02945 (LO767_02945)	-	647228..648220 (-)	993	WP_228245851.1	outer membrane protein assembly factor BamD	-

Sequence

Protein

• Length: 447 a.a.
• Molecular weight: 49750.91 Da
• Isoelectric Point: 6.0292

>NTDB_id=631085 LO767_RS02925 WP_233049122.1 642108..643451(-) (pilR) [Halopseudomonas aestusnigri strain GOM5]
MMQPTVLIIDDEPDILELLELTLGRMSLQTRSAKTMGEALNLLQSHHFDLCLTDMRLPDGDGLSIVRHIQQHFTSTPVAM
ITAYGSLDTAISALKAGAFDFLTKPVDLARLRELVSTALRLRDSQTEPGPQAQDPILGISPPIERLRNQISKLARSQAPL
YISGESGSGKELVARRIHALSPRAEQPFVPVNCGAIPSELMESEFFGHRKGSFSGAVADKPGLFQAANHGTLFLDEVADL
PMAMQVKLLRAIQEKAVRAVGSQHEEAVDVRLLCATHKDLANEVAQGRFRQDLFYRINVIELQVPPLRARREDLPLLVRS
ILSRLAERANRPAPAVTEAGMERLLNYRFPGNVRELENALERAFTLCEGQQIDANDLWLSACPSAAQDDTPDFSQIDHLE
DYLDNIERQAITQALEETRWNKTAAAKRLGLTFRSLRYRLKKLGLDD

Nucleotide

• Length: 1344 bp

>NTDB_id=631085 LO767_RS02925 WP_233049122.1 642108..643451(-) (pilR) [Halopseudomonas aestusnigri strain GOM5]
ATGATGCAACCCACCGTGCTGATCATCGACGACGAGCCGGACATTCTCGAATTGCTGGAGCTGACCCTCGGGCGCATGTC
GCTGCAAACCCGCAGCGCGAAAACCATGGGCGAAGCCTTGAACCTGCTGCAGTCTCACCACTTTGATCTGTGCCTGACGG
ACATGCGACTGCCTGACGGCGATGGCCTGAGCATCGTACGCCATATCCAGCAACACTTTACCAGCACCCCGGTCGCGATG
ATCACCGCCTATGGCAGTCTGGATACGGCGATCAGCGCACTTAAGGCCGGCGCATTTGACTTCCTGACCAAACCGGTCGA
TCTCGCCCGCCTGCGCGAGCTGGTCTCGACCGCACTGCGCCTGCGAGATTCGCAGACCGAACCCGGGCCCCAGGCACAGG
ACCCGATCCTCGGCATCTCGCCACCAATCGAGCGACTGCGCAACCAGATCAGCAAACTGGCGCGCAGTCAGGCGCCACTG
TATATCAGCGGCGAGTCCGGCAGCGGCAAGGAACTGGTAGCCCGTCGCATTCACGCGCTCAGCCCCAGAGCCGAACAGCC
CTTTGTACCGGTCAACTGCGGCGCCATACCGTCCGAGTTGATGGAAAGCGAGTTTTTCGGCCACCGCAAAGGCAGCTTTT
CCGGTGCAGTTGCCGACAAGCCGGGCCTGTTCCAGGCCGCCAATCACGGTACTCTGTTTCTCGACGAGGTCGCCGACCTG
CCGATGGCCATGCAGGTCAAGCTGCTGCGGGCAATCCAGGAGAAGGCGGTTCGCGCAGTCGGCAGCCAGCACGAGGAAGC
GGTTGACGTACGTCTGTTGTGCGCTACCCACAAGGATCTCGCCAACGAGGTAGCCCAGGGACGCTTCCGCCAGGACCTGT
TCTACCGCATCAACGTGATCGAACTGCAGGTGCCACCGCTGCGGGCGCGCCGCGAGGACCTGCCGCTGCTGGTCCGCAGT
ATCCTCAGCCGCCTGGCCGAGCGCGCCAACCGTCCCGCGCCCGCGGTCACCGAGGCCGGTATGGAACGGCTGCTCAATTA
CCGCTTCCCGGGCAACGTACGCGAGCTGGAAAATGCGCTGGAGCGGGCCTTCACCCTGTGCGAAGGCCAGCAGATCGACG
CCAATGACCTGTGGCTCAGCGCCTGCCCAAGTGCGGCCCAGGATGACACTCCCGATTTCAGTCAGATCGACCATCTGGAG
GATTATCTGGACAACATCGAGCGCCAGGCGATCACCCAGGCACTGGAAGAGACCCGCTGGAACAAGACCGCCGCCGCCAA
GCGGCTGGGTCTCACCTTTCGCTCCCTGCGCTACCGCCTGAAGAAGCTGGGCCTGGACGACTGA

Domains

Predicted by InterproScan.

• Sigma-54 interaction domain (Sigma54_activat) (137-303)

• Bacterial regulatory protein, Fis family (HTH_8) (403-443)

• Response regulator receiver domain (Response_reg) (6-115)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	72.422	99.776	0.723
pilR	Acinetobacter baumannii strain A118	49.567	100	0.512