Detailed information    

insolico Bioinformatically predicted

Overview

Name   comX   Type   Regulator
Locus tag   LP473_RS11175 Genome accession   NZ_CP087699
Coordinates   2224942..2225436 (-) Length   164 a.a.
NCBI ID   WP_252174775.1    Uniprot ID   -
Organism   Lactococcus lactis subsp. lactis strain IBB417     
Function   activation of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2219942..2230436
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LP473_RS11175 (LP473_11180) comX 2224942..2225436 (-) 495 WP_252174775.1 sigma-70 family RNA polymerase sigma factor Regulator
  LP473_RS11180 (LP473_11185) ezrA 2225692..2227422 (-) 1731 WP_153927583.1 septation ring formation regulator EzrA -
  LP473_RS11185 (LP473_11190) tsf 2227627..2228655 (-) 1029 WP_003132668.1 translation elongation factor Ts -
  LP473_RS11190 (LP473_11195) rpsB 2228776..2229543 (-) 768 WP_011836067.1 30S ribosomal protein S2 -

Sequence

Protein


Download         Length: 164 a.a.        Molecular weight: 19788.80 Da        Isoelectric Point: 6.6116

>NTDB_id=631073 LP473_RS11175 WP_252174775.1 2224942..2225436(-) (comX) [Lactococcus lactis subsp. lactis strain IBB417]
MTYYLEEEGFEILFSEMKPIVMKLMKQIRIRTWKIEDYLQEGMIILHLLLEEQSDGQKLHTKFKVKYHQRLIDELRRSYA
KKRSHDHFIGLDVYECSDWINSGDTSPDNEVVFNHLLAEVYEGLSAHYQDLLLRQMRGEELTRMERYRLREKIKAILFSE
GKKD

Nucleotide


Download         Length: 495 bp        

>NTDB_id=631073 LP473_RS11175 WP_252174775.1 2224942..2225436(-) (comX) [Lactococcus lactis subsp. lactis strain IBB417]
ATGACATATTACTTGGAAGAAGAGGGTTTTGAAATTCTGTTTTCAGAAATGAAACCTATAGTCATGAAATTAATGAAACA
AATTCGCATTAGAACATGGAAAATAGAGGATTATCTTCAAGAGGGGATGATTATTTTACATCTTCTATTAGAAGAGCAGA
GCGATGGTCAAAAGCTGCATACAAAATTTAAGGTAAAGTATCATCAAAGATTAATAGATGAATTAAGGCGAAGTTATGCA
AAGAAACGAAGCCATGACCATTTTATAGGTTTAGATGTTTATGAATGCTCAGACTGGATAAATTCAGGTGATACTAGTCC
AGATAATGAAGTGGTCTTCAATCATTTGCTGGCAGAAGTATATGAAGGTTTGAGCGCACATTATCAAGACTTACTACTTC
GACAAATGCGAGGAGAAGAACTAACTCGCATGGAACGGTATCGCCTTCGTGAAAAAATAAAGGCTATTTTATTCTCAGAA
GGTAAGAAAGACTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comX Lactococcus lactis subsp. lactis strain DGCC12653

97.5

97.561

0.951
  comX Lactococcus lactis subsp. cremoris KW2

77.987

96.951

0.756