Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   Q783_RS03620 Genome accession   NC_022606
Coordinates   759949..761715 (+) Length   588 a.a.
NCBI ID   WP_034538566.1    Uniprot ID   -
Organism   Carnobacterium inhibens subsp. gilichinskyi     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 754949..766715
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q783_RS03600 (Q783_03650) dapF 756022..757011 (+) 990 WP_023177404.1 diaminopimelate epimerase -
  Q783_RS03605 (Q783_03655) cspD 757168..757368 (+) 201 WP_023177406.1 cold-shock protein CspD -
  Q783_RS03610 (Q783_03660) - 757664..758104 (+) 441 WP_023177407.1 MarR family winged helix-turn-helix transcriptional regulator -
  Q783_RS03615 (Q783_03665) rcrP 758133..759911 (+) 1779 WP_023177409.1 ABC transporter ATP-binding protein Regulator
  Q783_RS03620 (Q783_03670) rcrQ 759949..761715 (+) 1767 WP_034538566.1 ABC transporter ATP-binding protein Regulator
  Q783_RS03625 (Q783_03675) - 761788..762036 (-) 249 WP_007724863.1 GlsB/YeaQ/YmgE family stress response membrane protein -
  Q783_RS03630 (Q783_03680) - 762202..763422 (-) 1221 WP_023177412.1 toxic anion resistance protein -
  Q783_RS03635 (Q783_03685) - 763442..764146 (-) 705 WP_052326507.1 5-bromo-4-chloroindolyl phosphate hydrolysis family protein -
  Q783_RS03640 (Q783_03695) - 764416..764964 (+) 549 WP_023177417.1 NUDIX hydrolase -
  Q783_RS03645 (Q783_03700) macP 764987..765238 (+) 252 WP_023177419.1 cell wall synthase accessory phosphoprotein MacP -
  Q783_RS03650 (Q783_03705) - 765274..765966 (+) 693 WP_023177421.1 5'-methylthioadenosine/adenosylhomocysteine nucleosidase -
  Q783_RS03655 (Q783_03710) - 766036..766515 (-) 480 WP_023177423.1 GNAT family N-acetyltransferase -

Sequence

Protein


Download         Length: 588 a.a.        Molecular weight: 65103.74 Da        Isoelectric Point: 4.6913

>NTDB_id=63097 Q783_RS03620 WP_034538566.1 759949..761715(+) (rcrQ) [Carnobacterium inhibens subsp. gilichinskyi]
MAGGKPDNFKESIGKLANYCKTYMWYIIIAFIFAIIGTVFNLVGPDRLSEITDVITEGITGEIDLEKIKNIALLLVTLYI
LGVVLSYFQGFIMATVTQNVTKKLRTDISSKINRLPLRYFDSNNHGDILSRVTNDVDTIGQTLNQSLGQLVTAISLFVGS
LIMMFYTNVPMAIAAILSTVLGFALMLTIIKQSQKFFSQQQKSLGELNGHVEEIYTGHNIVKAFNGEESAIKEFNEINDT
LFDSAWKSQYISGLMMPLMNFIGNFGYVVVCVVGAYLAFNDHITFGVIVAFMMYIRFFTQPLSQIAQAFTSLQSAAAASE
RVFNFLEEEELEVETGKPTSLGTVKGNVTFDHVKFGYNPDRLIINDFSLEAKAGQKIAIVGPTGAGKTTLVNLLMRFYEV
NSGEIYIDGTPISSVTRGALHEQFCMVLQDTWLFEGTVRENIVYSKQGVSDEAVINACKAVGVHHFIQTLPHGYDTILDD
TTSLSAGQKQLMTIARAMVADAPLLILDEATSSVDTRTEIIIQNAMDHLMNGRTSFVIAHRLSTIKNADLIIVMKDGDVV
ESGNHEVLLEQNGFYADLYNSQFDQEEE

Nucleotide


Download         Length: 1767 bp        

>NTDB_id=63097 Q783_RS03620 WP_034538566.1 759949..761715(+) (rcrQ) [Carnobacterium inhibens subsp. gilichinskyi]
ATGGCAGGAGGAAAACCAGATAATTTCAAAGAATCTATCGGTAAATTAGCCAATTATTGTAAAACATATATGTGGTATAT
TATCATCGCATTTATTTTTGCTATTATCGGTACAGTATTCAATTTAGTAGGTCCTGATCGTCTTAGTGAAATTACAGATG
TGATCACTGAAGGTATCACAGGTGAAATCGATTTAGAAAAAATTAAAAATATTGCTTTGTTATTAGTTACATTGTACATT
CTTGGAGTTGTTTTATCTTATTTCCAAGGTTTTATTATGGCAACTGTAACTCAAAATGTAACCAAAAAATTGCGTACAGA
CATTTCATCAAAGATTAATCGTCTGCCATTACGTTATTTTGACAGTAATAATCATGGAGATATTTTAAGCCGTGTAACAA
ATGATGTCGATACGATCGGTCAAACATTAAACCAAAGTTTAGGTCAATTAGTGACGGCTATCAGCTTGTTTGTTGGTTCA
TTGATCATGATGTTTTATACAAATGTACCTATGGCTATTGCTGCTATTTTATCAACTGTTCTAGGTTTTGCGTTAATGCT
CACGATTATTAAACAATCTCAAAAATTCTTTAGCCAACAACAAAAAAGTTTAGGAGAACTAAATGGTCATGTAGAAGAAA
TCTATACTGGACATAATATTGTAAAAGCTTTTAATGGTGAAGAATCTGCTATTAAAGAATTTAATGAAATCAATGATACA
TTATTCGATAGTGCATGGAAATCGCAATATATTTCTGGTCTAATGATGCCTTTAATGAATTTCATTGGGAACTTTGGATA
TGTAGTTGTGTGTGTAGTAGGAGCTTATTTAGCGTTTAATGACCACATTACTTTTGGTGTGATTGTTGCCTTTATGATGT
ATATCCGTTTCTTTACGCAACCTCTTTCTCAGATCGCACAAGCTTTTACAAGTTTACAATCGGCTGCAGCTGCTAGTGAA
CGTGTTTTTAACTTCTTAGAAGAAGAAGAATTAGAAGTTGAAACAGGAAAACCAACTTCATTAGGTACGGTCAAAGGAAA
TGTAACATTTGATCACGTTAAGTTTGGTTACAATCCTGATCGCTTAATTATTAATGACTTTTCTCTAGAAGCTAAAGCAG
GGCAAAAAATTGCAATCGTAGGTCCTACAGGTGCTGGTAAAACGACATTAGTAAACTTATTGATGCGTTTTTACGAAGTG
AATAGTGGAGAAATCTACATTGACGGAACACCGATTTCTAGTGTGACACGTGGAGCTTTACATGAACAATTCTGTATGGT
ATTGCAAGATACATGGTTATTTGAAGGAACAGTAAGAGAAAATATCGTCTACAGCAAACAAGGAGTAAGCGATGAAGCAG
TTATCAATGCTTGTAAAGCAGTCGGTGTTCATCACTTTATTCAAACCTTGCCGCACGGTTACGATACGATTTTAGATGAT
ACAACAAGTTTGTCAGCTGGACAAAAACAATTAATGACGATCGCTCGTGCTATGGTAGCAGACGCACCATTATTGATTTT
GGATGAAGCAACAAGCTCAGTTGATACACGTACTGAAATCATTATTCAAAATGCGATGGATCACTTGATGAATGGAAGAA
CTTCATTTGTTATTGCACATCGTCTATCTACAATCAAAAATGCAGATTTAATTATTGTGATGAAAGACGGAGATGTAGTA
GAAAGCGGAAACCATGAAGTGTTATTGGAACAAAATGGTTTTTATGCTGATCTTTACAACAGTCAATTCGACCAAGAAGA
AGAATAA

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(27-302)

ABC transporter (ABC_tran)

(365-512)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

59.897

98.81

0.592

Multiple sequence alignment