Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   Q783_RS03615 Genome accession   NC_022606
Coordinates   758133..759911 (+) Length   592 a.a.
NCBI ID   WP_023177409.1    Uniprot ID   U5S843
Organism   Carnobacterium inhibens subsp. gilichinskyi     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 753133..764911
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q783_RS03600 (Q783_03650) dapF 756022..757011 (+) 990 WP_023177404.1 diaminopimelate epimerase -
  Q783_RS03605 (Q783_03655) cspD 757168..757368 (+) 201 WP_023177406.1 cold-shock protein CspD -
  Q783_RS03610 (Q783_03660) - 757664..758104 (+) 441 WP_023177407.1 MarR family winged helix-turn-helix transcriptional regulator -
  Q783_RS03615 (Q783_03665) rcrP 758133..759911 (+) 1779 WP_023177409.1 ABC transporter ATP-binding protein Regulator
  Q783_RS03620 (Q783_03670) rcrQ 759949..761715 (+) 1767 WP_034538566.1 ABC transporter ATP-binding protein Regulator
  Q783_RS03625 (Q783_03675) - 761788..762036 (-) 249 WP_007724863.1 GlsB/YeaQ/YmgE family stress response membrane protein -
  Q783_RS03630 (Q783_03680) - 762202..763422 (-) 1221 WP_023177412.1 toxic anion resistance protein -
  Q783_RS03635 (Q783_03685) - 763442..764146 (-) 705 WP_052326507.1 5-bromo-4-chloroindolyl phosphate hydrolysis family protein -

Sequence

Protein


Download         Length: 592 a.a.        Molecular weight: 65365.96 Da        Isoelectric Point: 5.8049

>NTDB_id=63096 Q783_RS03615 WP_023177409.1 758133..759911(+) (rcrP) [Carnobacterium inhibens subsp. gilichinskyi]
MLKILKYLKRKEWLMILCSVIFIVAQVYLDLELPEYMSKITELIQIPGSKMEDIFKNGGFMMLCALGSLLASFVTVFFVS
KVAAGLSRTVRKEVFTKVEGFSMEEINHFSTASLITRSSNDVTQIQMAMSLGLQVLIKAPIMAVWAITKIMDKSWEWTLS
TAGAVGVLLLIISIIVIFALPKFKIIQNLTDNLNRVTRENLTGLRVIRAYNAEAFEEEKFGEANNKLTKTNLFITRIMAI
MGPGMSLIMSGLSLAIYWIGAYLINDVQLVNQSSALERISLFSDMVVFSSYAVQVVMSFMMLTIVFIIVPRAAVSAGRIL
EVLNTKETIKDGNLTQSDSDQKGTIVFDNVTFQYPDATEAILENISFTANKGETVAFIGSTGSGKSTLVNLVPRFFDVTS
GAIKINGHDIKEYTQKHLHSLVGFVPQKAFLFSGTVRSNVSYGDAGHEVTDTDMKKAIEIAQSSDFVEKMEGGYDASIAQ
SGSNVSGGQRQRLAISRAISRKPEILVFDDSFSALDYKTDLVLRAALNTELADTTKLIVAQRIGTIRDADKIIVLEEGKI
VGIGTHQELMQTCEVYQDIAYSQLSKEELAGE

Nucleotide


Download         Length: 1779 bp        

>NTDB_id=63096 Q783_RS03615 WP_023177409.1 758133..759911(+) (rcrP) [Carnobacterium inhibens subsp. gilichinskyi]
ATGCTGAAAATACTAAAGTATTTAAAACGAAAAGAATGGCTAATGATTTTATGTAGTGTCATCTTTATCGTTGCTCAAGT
TTATTTAGATTTGGAATTACCAGAATACATGTCTAAAATTACTGAGCTTATTCAAATTCCAGGATCAAAAATGGAAGATA
TATTCAAAAATGGTGGATTTATGATGTTATGTGCTTTAGGTAGCTTACTAGCATCTTTTGTAACAGTATTTTTTGTTTCA
AAAGTAGCAGCAGGGCTATCACGCACAGTAAGAAAAGAAGTATTTACAAAAGTTGAAGGATTTTCAATGGAAGAAATCAA
TCATTTTTCTACTGCAAGTTTGATTACTCGTTCTTCAAATGATGTAACACAAATACAAATGGCTATGTCGCTAGGGTTGC
AAGTATTGATCAAAGCACCTATTATGGCTGTTTGGGCCATTACAAAAATAATGGATAAATCTTGGGAGTGGACTCTTTCA
ACAGCTGGTGCAGTAGGAGTATTATTACTTATCATCAGTATCATAGTAATATTCGCTTTACCTAAGTTTAAAATTATTCA
AAATTTAACGGATAATCTTAACCGGGTTACTCGCGAAAACTTAACTGGATTACGTGTGATTCGTGCATACAATGCAGAAG
CTTTTGAAGAAGAAAAATTTGGAGAAGCTAATAATAAATTAACAAAAACAAACTTATTTATTACTAGAATTATGGCCATT
ATGGGGCCTGGGATGTCATTGATCATGAGCGGATTAAGTTTAGCTATTTATTGGATAGGTGCATACTTAATCAATGATGT
TCAACTAGTGAATCAATCAAGTGCTCTAGAACGTATCAGTTTATTTAGTGATATGGTTGTATTCTCTTCATATGCTGTTC
AAGTTGTTATGTCATTCATGATGTTAACGATTGTATTCATTATTGTACCGCGTGCTGCAGTATCAGCTGGACGTATTTTA
GAGGTCTTAAATACAAAAGAAACTATCAAAGATGGAAACTTAACACAATCTGATAGTGATCAAAAAGGAACAATCGTATT
TGACAACGTAACATTCCAATATCCAGATGCTACTGAGGCTATATTAGAAAATATTTCCTTTACAGCAAATAAAGGTGAAA
CGGTTGCTTTTATCGGTTCTACGGGTAGCGGAAAGAGTACACTCGTTAACTTAGTACCCCGTTTCTTTGATGTAACAAGT
GGAGCAATAAAAATCAATGGTCATGATATTAAAGAATATACGCAAAAACATTTGCATTCTCTAGTTGGTTTTGTTCCGCA
AAAAGCGTTCTTATTTAGTGGGACGGTTCGTTCAAATGTAAGTTATGGAGACGCTGGTCATGAAGTGACAGATACTGACA
TGAAAAAAGCAATTGAAATAGCGCAAAGTAGTGATTTTGTTGAGAAAATGGAAGGCGGATATGATGCTTCTATTGCTCAA
TCAGGTAGCAATGTATCTGGTGGTCAACGTCAACGTTTAGCCATTTCACGTGCTATTTCACGCAAACCAGAGATCTTAGT
GTTTGATGATTCATTTTCAGCTTTAGATTACAAAACTGACCTTGTTTTACGTGCAGCACTAAATACAGAGTTAGCAGATA
CAACAAAATTAATTGTTGCTCAACGTATTGGTACGATTCGTGATGCAGATAAGATCATTGTTTTAGAAGAAGGAAAAATT
GTTGGAATTGGTACACATCAAGAATTGATGCAAACATGCGAAGTCTATCAAGACATTGCTTATTCTCAACTTTCTAAGGA
GGAATTAGCAGGTGAGTAA

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(17-268)

ABC transporter (ABC_tran)

(362-511)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB U5S843

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

51.333

100

0.52

Multiple sequence alignment