Detailed information NTG0630963

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: LPH51_RS05725
• Genome accession: NZ_CP087692
• Coordinates: 1395586..1396998 (-)
• Length: 470 a.a.
• NCBI ID: WP_038269641.1
• Uniprot ID: Z9JNG2
• Organism: Xylella taiwanensis strain PLS427
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 1390586..1401998

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LPH51_RS05700 (LPH51_05700)	-	1391073..1391279 (-)	207	WP_152536555.1	hypothetical protein	-
LPH51_RS05705 (LPH51_05705)	-	1391676..1392218 (+)	543	WP_038269649.1	pilin	-
LPH51_RS05710 (LPH51_05710)	-	1392422..1392898 (+)	477	WP_038269647.1	pilin	-
LPH51_RS05715 (LPH51_05715)	-	1393343..1393645 (+)	303	WP_162814113.1	hypothetical protein	-
LPH51_RS05720 (LPH51_05720)	pilB	1393761..1395494 (+)	1734	WP_038269643.1	type IV-A pilus assembly ATPase PilB	Machinery gene
LPH51_RS05725 (LPH51_05725)	pilR	1395586..1396998 (-)	1413	WP_038269641.1	sigma-54 dependent transcriptional regulator	Regulator
LPH51_RS05730 (LPH51_05730)	-	1397167..1398777 (-)	1611	WP_038269639.1	ATP-binding protein	-
LPH51_RS05735 (LPH51_05735)	sucC	1399033..1400196 (+)	1164	WP_038269637.1	ADP-forming succinate--CoA ligase subunit beta	-
LPH51_RS05740 (LPH51_05740)	sucD	1400225..1401097 (+)	873	WP_038269635.1	succinate--CoA ligase subunit alpha	-

Sequence

Protein

• Length: 470 a.a.
• Molecular weight: 51178.79 Da
• Isoelectric Point: 6.5626

>NTDB_id=630963 LPH51_RS05725 WP_038269641.1 1395586..1396998(-) (pilR) [Xylella taiwanensis strain PLS427]
MNESRSALIVDDERDIRELLILTLGRMGLRISTAANLAEAHALLESDSFNLCITDMRLPDGSGIDLVNKIVRHYPRTPVA
MITAFGNMELAVEALKAGAFDFVSKPVDLNVLRGIVRHALELNNRDRTVVSTQPQGPDRRLLGESAPMAQLRATIAKVAR
SQAPVYILGESGVGKELVARTIHEQSVRAAGPFVPVNCGAIPADLMESEFFGHKKGSFTGAHTDKPGLFQSAGGGTLFLD
EIAELPLHMQVKLLRAIQEKSIRPIGAAAEVPVDVRILSATHKDLSDLIADGRFRHDLYYRINVIEIRVPPLRERTGDLP
HLAAAIVARLAHTNGRSIPLLSPSALEVLDHYPFPGNVRELENILERALALTEDDDIGAADLHLPQGGLHGQGSPLPVVH
TASPIVSVDPSVPAEDENTPAALPSYMEQLERAAIQKALEENRWNKTKTAAQLGITFRALRYKLKKLGME

Nucleotide

• Length: 1413 bp

>NTDB_id=630963 LPH51_RS05725 WP_038269641.1 1395586..1396998(-) (pilR) [Xylella taiwanensis strain PLS427]
ATGAACGAATCCCGCAGTGCTCTCATCGTCGATGACGAGCGTGACATCCGTGAACTTTTAATCCTTACGCTAGGTCGTAT
GGGGCTTCGCATCAGCACGGCTGCTAATCTGGCAGAAGCGCACGCATTACTTGAATCTGATTCGTTCAACCTTTGCATCA
CTGATATGCGTTTACCTGACGGTAGTGGCATCGACTTGGTGAACAAGATCGTGCGCCACTACCCGCGTACCCCGGTGGCG
ATGATTACTGCTTTCGGCAATATGGAACTGGCTGTAGAAGCGCTCAAAGCAGGTGCTTTTGACTTCGTCAGCAAACCAGT
CGATTTAAACGTGCTGCGTGGCATCGTCCGCCATGCCTTGGAACTGAACAATCGCGACCGCACTGTCGTGTCAACTCAGC
CACAAGGTCCTGACCGACGTCTCCTTGGCGAATCCGCACCCATGGCCCAGCTTCGGGCCACCATCGCTAAAGTGGCGCGT
AGCCAAGCCCCGGTTTATATCCTTGGTGAATCCGGAGTTGGCAAAGAACTGGTTGCACGCACCATCCACGAACAGAGCGT
GCGTGCGGCTGGACCGTTCGTCCCGGTCAATTGTGGTGCGATCCCTGCGGATCTCATGGAAAGCGAATTTTTCGGCCACA
AGAAAGGGAGTTTCACCGGTGCTCATACTGATAAACCCGGTTTATTTCAAAGTGCTGGCGGAGGTACTTTATTCCTGGAC
GAAATTGCCGAATTACCGTTGCACATGCAGGTCAAACTACTGCGTGCGATTCAGGAGAAATCGATACGCCCCATCGGGGC
AGCCGCCGAAGTGCCAGTAGATGTGCGTATTTTGTCGGCGACCCACAAAGATCTCAGTGACCTGATTGCCGATGGCCGCT
TCCGCCACGACTTGTACTACCGCATCAATGTGATCGAAATACGTGTCCCGCCGCTGCGGGAGCGCACTGGTGATTTGCCA
CATCTGGCCGCAGCCATTGTGGCTCGCTTGGCGCACACCAATGGGCGGTCGATCCCGTTGCTCTCACCCTCCGCCTTAGA
GGTCTTAGATCATTATCCGTTCCCGGGTAACGTGCGTGAATTGGAGAACATTCTGGAGCGTGCTCTGGCGCTGACCGAAG
ACGATGATATCGGTGCTGCGGATCTGCACCTGCCCCAAGGCGGTCTCCATGGACAGGGATCGCCGCTTCCAGTAGTGCAC
ACAGCTTCCCCAATTGTGTCTGTAGACCCATCAGTACCGGCGGAGGATGAGAACACACCCGCTGCCCTGCCGTCGTACAT
GGAGCAGTTAGAACGTGCTGCCATTCAGAAAGCTCTGGAAGAGAATCGCTGGAATAAGACAAAGACAGCCGCTCAACTCG
GCATCACCTTCCGTGCGTTGCGTTACAAACTAAAGAAGCTGGGGATGGAGTGA

Domains

Predicted by InterproScan.

• Sigma-54 interaction domain (Sigma54_activat) (142-307)

• Bacterial regulatory protein, Fis family (HTH_8) (427-467)

• Response regulator receiver domain (Response_reg) (8-116)

3D structure

• AlphaFold DB: Z9JNG2

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	58.672	99.362	0.583
pilR	Acinetobacter baumannii strain A118	47.246	100	0.474