Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   LPH48_RS11860 Genome accession   NZ_CP087691
Coordinates   2812423..2813835 (-) Length   470 a.a.
NCBI ID   WP_038269641.1    Uniprot ID   Z9JNG2
Organism   Xylella taiwanensis strain PLS422     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 2807423..2818835
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LPH48_RS11835 (LPH48_11835) - 2807910..2808116 (-) 207 WP_152536555.1 hypothetical protein -
  LPH48_RS11840 (LPH48_11840) - 2808513..2809055 (+) 543 WP_038269649.1 pilin -
  LPH48_RS11845 (LPH48_11845) - 2809259..2809735 (+) 477 WP_038269647.1 pilin -
  LPH48_RS11850 (LPH48_11850) - 2810180..2810482 (+) 303 WP_162814113.1 hypothetical protein -
  LPH48_RS11855 (LPH48_11855) pilB 2810598..2812331 (+) 1734 WP_038269643.1 type IV-A pilus assembly ATPase PilB Machinery gene
  LPH48_RS11860 (LPH48_11860) pilR 2812423..2813835 (-) 1413 WP_038269641.1 sigma-54 dependent transcriptional regulator Regulator
  LPH48_RS11865 (LPH48_11865) - 2814004..2815614 (-) 1611 WP_038269639.1 ATP-binding protein -
  LPH48_RS11870 (LPH48_11870) sucC 2815870..2817033 (+) 1164 WP_038269637.1 ADP-forming succinate--CoA ligase subunit beta -
  LPH48_RS11875 (LPH48_11875) sucD 2817062..2817934 (+) 873 WP_038269635.1 succinate--CoA ligase subunit alpha -

Sequence

Protein


Download         Length: 470 a.a.        Molecular weight: 51178.79 Da        Isoelectric Point: 6.5626

>NTDB_id=630956 LPH48_RS11860 WP_038269641.1 2812423..2813835(-) (pilR) [Xylella taiwanensis strain PLS422]
MNESRSALIVDDERDIRELLILTLGRMGLRISTAANLAEAHALLESDSFNLCITDMRLPDGSGIDLVNKIVRHYPRTPVA
MITAFGNMELAVEALKAGAFDFVSKPVDLNVLRGIVRHALELNNRDRTVVSTQPQGPDRRLLGESAPMAQLRATIAKVAR
SQAPVYILGESGVGKELVARTIHEQSVRAAGPFVPVNCGAIPADLMESEFFGHKKGSFTGAHTDKPGLFQSAGGGTLFLD
EIAELPLHMQVKLLRAIQEKSIRPIGAAAEVPVDVRILSATHKDLSDLIADGRFRHDLYYRINVIEIRVPPLRERTGDLP
HLAAAIVARLAHTNGRSIPLLSPSALEVLDHYPFPGNVRELENILERALALTEDDDIGAADLHLPQGGLHGQGSPLPVVH
TASPIVSVDPSVPAEDENTPAALPSYMEQLERAAIQKALEENRWNKTKTAAQLGITFRALRYKLKKLGME

Nucleotide


Download         Length: 1413 bp        

>NTDB_id=630956 LPH48_RS11860 WP_038269641.1 2812423..2813835(-) (pilR) [Xylella taiwanensis strain PLS422]
ATGAACGAATCCCGCAGTGCTCTCATCGTCGATGACGAGCGTGACATCCGTGAACTTTTAATCCTTACGCTAGGTCGTAT
GGGGCTTCGCATCAGCACGGCTGCTAATCTGGCAGAAGCGCACGCATTACTTGAATCTGATTCGTTCAACCTTTGCATCA
CTGATATGCGTTTACCTGACGGTAGTGGCATCGACTTGGTGAACAAGATCGTGCGCCACTACCCGCGTACCCCGGTGGCG
ATGATTACTGCTTTCGGCAATATGGAACTGGCTGTAGAAGCGCTCAAAGCAGGTGCTTTTGACTTCGTCAGCAAACCAGT
CGATTTAAACGTGCTGCGTGGCATCGTCCGCCATGCCTTGGAACTGAACAATCGCGACCGCACTGTCGTGTCAACTCAGC
CACAAGGTCCTGACCGACGTCTCCTTGGCGAATCCGCACCCATGGCCCAGCTTCGGGCCACCATCGCTAAAGTGGCGCGT
AGCCAAGCCCCGGTTTATATCCTTGGTGAATCCGGAGTTGGCAAAGAACTGGTTGCACGCACCATCCACGAACAGAGCGT
GCGTGCGGCTGGACCGTTCGTCCCGGTCAATTGTGGTGCGATCCCTGCGGATCTCATGGAAAGCGAATTTTTCGGCCACA
AGAAAGGGAGTTTCACCGGTGCTCATACTGATAAACCCGGTTTATTTCAAAGTGCTGGCGGAGGTACTTTATTCCTGGAC
GAAATTGCCGAATTACCGTTGCACATGCAGGTCAAACTACTGCGTGCGATTCAGGAGAAATCGATACGCCCCATCGGGGC
AGCCGCCGAAGTGCCAGTAGATGTGCGTATTTTGTCGGCGACCCACAAAGATCTCAGTGACCTGATTGCCGATGGCCGCT
TCCGCCACGACTTGTACTACCGCATCAATGTGATCGAAATACGTGTCCCGCCGCTGCGGGAGCGCACTGGTGATTTGCCA
CATCTGGCCGCAGCCATTGTGGCTCGCTTGGCGCACACCAATGGGCGGTCGATCCCGTTGCTCTCACCCTCCGCCTTAGA
GGTCTTAGATCATTATCCGTTCCCGGGTAACGTGCGTGAATTGGAGAACATTCTGGAGCGTGCTCTGGCGCTGACCGAAG
ACGATGATATCGGTGCTGCGGATCTGCACCTGCCCCAAGGCGGTCTCCATGGACAGGGATCGCCGCTTCCAGTAGTGCAC
ACAGCTTCCCCAATTGTGTCTGTAGACCCATCAGTACCGGCGGAGGATGAGAACACACCCGCTGCCCTGCCGTCGTACAT
GGAGCAGTTAGAACGTGCTGCCATTCAGAAAGCTCTGGAAGAGAATCGCTGGAATAAGACAAAGACAGCCGCTCAACTCG
GCATCACCTTCCGTGCGTTGCGTTACAAACTAAAGAAGCTGGGGATGGAGTGA

Domains

Predicted by InterproScan.

Sigma-54 interaction domain (Sigma54_activat)

(142-307)

Bacterial regulatory protein, Fis family (HTH_8)

(427-467)

Response regulator receiver domain (Response_reg)

(8-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Z9JNG2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

58.672

99.362

0.583
  pilR Acinetobacter baumannii strain A118

47.246

100

0.474