Detailed information NTG0630918

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: LPH50_RS05640
• Genome accession: NZ_CP087689
• Coordinates: 1387999..1389411 (-)
• Length: 470 a.a.
• NCBI ID: WP_038269641.1
• Uniprot ID: Z9JNG2
• Organism: Xylella taiwanensis strain PLS415
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 1382999..1394411

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LPH50_RS05615 (LPH50_05615)	-	1383486..1383692 (-)	207	WP_152536555.1	hypothetical protein	-
LPH50_RS05620 (LPH50_05620)	-	1384089..1384631 (+)	543	WP_038269649.1	pilin	-
LPH50_RS05625 (LPH50_05625)	-	1384835..1385311 (+)	477	WP_038269647.1	pilin	-
LPH50_RS05630 (LPH50_05630)	-	1385693..1386058 (+)	366	WP_038269645.1	hypothetical protein	-
LPH50_RS05635 (LPH50_05635)	pilB	1386174..1387907 (+)	1734	WP_038269643.1	type IV-A pilus assembly ATPase PilB	Machinery gene
LPH50_RS05640 (LPH50_05640)	pilR	1387999..1389411 (-)	1413	WP_038269641.1	sigma-54 dependent transcriptional regulator	Regulator
LPH50_RS05645 (LPH50_05645)	-	1389580..1391190 (-)	1611	WP_038269639.1	ATP-binding protein	-
LPH50_RS05650 (LPH50_05650)	sucC	1391446..1392609 (+)	1164	WP_038269637.1	ADP-forming succinate--CoA ligase subunit beta	-
LPH50_RS05655 (LPH50_05655)	sucD	1392638..1393510 (+)	873	WP_038269635.1	succinate--CoA ligase subunit alpha	-

Sequence

Protein

• Length: 470 a.a.
• Molecular weight: 51178.79 Da
• Isoelectric Point: 6.5626

>NTDB_id=630918 LPH50_RS05640 WP_038269641.1 1387999..1389411(-) (pilR) [Xylella taiwanensis strain PLS415]
MNESRSALIVDDERDIRELLILTLGRMGLRISTAANLAEAHALLESDSFNLCITDMRLPDGSGIDLVNKIVRHYPRTPVA
MITAFGNMELAVEALKAGAFDFVSKPVDLNVLRGIVRHALELNNRDRTVVSTQPQGPDRRLLGESAPMAQLRATIAKVAR
SQAPVYILGESGVGKELVARTIHEQSVRAAGPFVPVNCGAIPADLMESEFFGHKKGSFTGAHTDKPGLFQSAGGGTLFLD
EIAELPLHMQVKLLRAIQEKSIRPIGAAAEVPVDVRILSATHKDLSDLIADGRFRHDLYYRINVIEIRVPPLRERTGDLP
HLAAAIVARLAHTNGRSIPLLSPSALEVLDHYPFPGNVRELENILERALALTEDDDIGAADLHLPQGGLHGQGSPLPVVH
TASPIVSVDPSVPAEDENTPAALPSYMEQLERAAIQKALEENRWNKTKTAAQLGITFRALRYKLKKLGME

Nucleotide

• Length: 1413 bp

>NTDB_id=630918 LPH50_RS05640 WP_038269641.1 1387999..1389411(-) (pilR) [Xylella taiwanensis strain PLS415]
ATGAACGAATCCCGCAGTGCTCTCATCGTCGATGACGAGCGTGACATCCGTGAACTTTTAATCCTTACGCTAGGTCGTAT
GGGGCTTCGCATCAGCACGGCTGCTAATCTGGCAGAAGCGCACGCATTACTTGAATCTGATTCGTTCAACCTTTGCATCA
CTGATATGCGTTTACCTGACGGTAGTGGCATCGACTTGGTGAACAAGATCGTGCGCCACTACCCGCGTACCCCGGTGGCG
ATGATTACTGCTTTCGGCAATATGGAACTGGCTGTAGAAGCGCTCAAAGCAGGTGCTTTTGACTTCGTCAGCAAACCAGT
CGATTTAAACGTGCTGCGTGGCATCGTCCGCCATGCCTTGGAACTGAACAATCGCGACCGCACTGTCGTGTCAACTCAGC
CACAAGGTCCTGACCGACGTCTCCTTGGCGAATCCGCACCCATGGCCCAGCTTCGGGCCACCATCGCTAAAGTGGCGCGT
AGCCAAGCCCCGGTTTATATCCTTGGTGAATCCGGAGTTGGCAAAGAACTGGTTGCACGCACCATCCACGAACAGAGCGT
GCGTGCGGCTGGACCGTTCGTCCCGGTCAATTGTGGTGCGATCCCTGCGGATCTCATGGAAAGCGAATTTTTCGGCCACA
AGAAAGGGAGTTTCACCGGTGCTCATACTGATAAACCCGGTTTATTTCAAAGTGCTGGCGGAGGTACTTTATTCCTGGAC
GAAATTGCCGAATTACCGTTGCACATGCAGGTCAAACTACTGCGTGCGATTCAGGAGAAATCGATACGCCCCATCGGGGC
AGCCGCCGAAGTGCCAGTAGATGTGCGTATTTTGTCGGCGACCCACAAAGATCTCAGTGACCTGATTGCCGATGGCCGCT
TCCGCCACGACTTGTACTACCGCATCAATGTGATCGAAATACGTGTCCCGCCGCTGCGGGAGCGCACTGGTGATTTGCCA
CATCTGGCCGCAGCCATTGTGGCTCGCTTGGCGCACACCAATGGGCGGTCGATCCCGTTGCTCTCACCCTCCGCCTTAGA
GGTCTTAGATCATTATCCGTTCCCGGGTAACGTGCGTGAATTGGAGAACATTCTGGAGCGTGCTCTGGCGCTGACCGAAG
ACGATGATATCGGTGCTGCGGATCTGCACCTGCCCCAAGGCGGTCTCCATGGACAGGGATCGCCGCTTCCAGTAGTGCAC
ACAGCTTCCCCAATTGTGTCTGTAGACCCATCAGTACCGGCGGAGGATGAGAACACACCCGCTGCCCTGCCGTCGTACAT
GGAGCAGTTAGAACGTGCTGCCATTCAGAAAGCTCTGGAAGAGAATCGCTGGAATAAGACAAAGACAGCCGCTCAACTCG
GCATCACCTTCCGTGCGTTGCGTTACAAACTAAAGAAGCTGGGGATGGAGTGA

Domains

Predicted by InterproScan.

• Sigma-54 interaction domain (Sigma54_activat) (142-307)

• Bacterial regulatory protein, Fis family (HTH_8) (427-467)

• Response regulator receiver domain (Response_reg) (8-116)

3D structure

• AlphaFold DB: Z9JNG2

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	58.672	99.362	0.583
pilR	Acinetobacter baumannii strain A118	47.246	100	0.474