Detailed information    

insolico Bioinformatically predicted

Overview

Name   recP/tkt   Type   Machinery gene
Locus tag   N4T05_RS06675 Genome accession   NZ_CP104559
Coordinates   1361077..1363065 (+) Length   662 a.a.
NCBI ID   WP_234739872.1    Uniprot ID   -
Organism   Staphylococcus aureus strain SA2107     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1356077..1368065
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N4T05_RS06635 (N4T05_06635) rpmG 1356159..1356308 (+) 150 WP_001265708.1 50S ribosomal protein L33 -
  N4T05_RS06640 (N4T05_06640) rpsN 1356761..1357030 (+) 270 WP_001085655.1 30S ribosomal protein S14 -
  N4T05_RS06645 (N4T05_06645) guaC 1357187..1358164 (+) 978 WP_103215305.1 GMP reductase -
  N4T05_RS06655 (N4T05_06655) - 1358186..1359202 (+) 1017 WP_169428106.1 CAP domain-containing protein -
  N4T05_RS06660 (N4T05_06660) dinR/lexA 1359582..1360205 (-) 624 WP_001208755.1 transcriptional repressor LexA Regulator
  N4T05_RS06665 (N4T05_06665) sosA 1360348..1360581 (+) 234 WP_000499648.1 DNA damage-induced cell division inhibitor SosA -
  N4T05_RS06670 (N4T05_06670) - 1360717..1360956 (+) 240 WP_000071351.1 DUF896 domain-containing protein -
  N4T05_RS06675 (N4T05_06675) recP/tkt 1361077..1363065 (+) 1989 WP_234739872.1 transketolase Machinery gene
  N4T05_RS06680 (N4T05_06680) - 1363343..1363585 (+) 243 WP_000246909.1 YneF family protein -
  N4T05_RS06685 (N4T05_06685) - 1363572..1363670 (+) 99 WP_001789897.1 hypothetical protein -
  N4T05_RS06690 (N4T05_06690) - 1363764..1364231 (+) 468 WP_000966144.1 CcdC family protein -
  N4T05_RS06695 (N4T05_06695) sbcD 1364355..1365476 (+) 1122 WP_000691306.1 exonuclease subunit SbcD -

Sequence

Protein


Download         Length: 662 a.a.        Molecular weight: 72320.93 Da        Isoelectric Point: 4.7115

>NTDB_id=630893 N4T05_RS06675 WP_234739872.1 1361077..1363065(+) (recP/tkt) [Staphylococcus aureus strain SA2107]
MFNEKDQLAVDTLRALSIDTIEKANSGHPGLPMGAAPMAYTLWTRHLNFNPQSKDYFNRDRFVLSAGHGSALLYSLLHVS
GSLELEELKQFRQWGSKTPGHPEYRHTDGVEVTTGPLGQGFAMSVGLALAEDHLAGKFNKEGYNVVDHYTYVLASDGDLM
EGISHEAASFAGHNKLSKLVVLYDSNDISLDGELNKAFSENTKARFEAYGWNYLLVKDGNDLEEIDKAITTAKSQEGPTI
IEVKTTIGFGSPNKAGTNGVHGAPLGEDERKLTFENYGLDPEKRFNVSEEVYEIFQNTMLKRANEDESRWNSLLEKYAET
YPELAEEFKLAISGKLPKNYKDELPRFELGHNGASRADSGTVIQAISKTVPSFFGGSADLAGSNKSNVNDATDYSSETPE
GKNVWFGVREFAMGAAVNGMAAHGGLHPYGATFFVFSDYLKPALRLSSIMGLNATFIFTHDSIAVGEDGPTHEPIEQLAG
LRAIPNMNVIRPADGNETRIAWEVALESESTPTSLVLTRQNLPVLDVPEDVVEEGVRKGAYTVYGSEETPEFLLLASGSE
VSLAVEAAKDLEKQGKSVRVVSMPNWNAFEQQSEEYKESVIPSSVTKRVAIEMASPLGWHKYVGIAGKVIAIDGFGASAP
GDLVVEKYGFTKENILNQVMSL

Nucleotide


Download         Length: 1989 bp        

>NTDB_id=630893 N4T05_RS06675 WP_234739872.1 1361077..1363065(+) (recP/tkt) [Staphylococcus aureus strain SA2107]
ATGTTTAATGAAAAAGATCAATTAGCTGTTGATACGCTACGTGCACTAAGTATCGACACAATCGAAAAAGCGAATTCTGG
TCATCCAGGATTACCTATGGGAGCTGCCCCAATGGCTTACACTTTGTGGACACGTCATCTGAATTTTAATCCACAATCTA
AAGATTACTTCAATAGAGACCGTTTCGTATTATCTGCAGGGCATGGTTCAGCACTATTGTATAGCTTGTTACATGTTTCT
GGTAGTTTAGAATTAGAAGAATTAAAGCAATTTAGACAATGGGGTTCTAAAACACCAGGTCATCCTGAATACAGACATAC
AGATGGTGTAGAAGTTACTACTGGACCACTTGGACAAGGTTTTGCTATGTCAGTTGGATTAGCTTTAGCAGAAGATCACC
TAGCAGGGAAATTTAATAAAGAAGGATATAATGTTGTAGATCATTACACATATGTATTAGCTTCTGACGGTGATTTAATG
GAAGGTATTTCGCATGAAGCAGCTTCATTTGCTGGACATAATAAATTAAGTAAATTAGTTGTTTTATACGATTCAAATGA
TATTTCATTAGATGGCGAATTAAACAAAGCTTTTTCTGAAAACACAAAAGCTCGTTTTGAAGCATATGGTTGGAATTACT
TACTAGTTAAAGATGGTAATGATTTAGAAGAAATTGATAAAGCGATTACTACAGCTAAATCTCAAGAAGGACCAACGATT
ATTGAAGTTAAAACAACAATCGGATTTGGTTCACCTAATAAAGCAGGAACTAATGGTGTTCATGGGGCACCTTTAGGTGA
AGATGAAAGAAAATTAACATTCGAAAATTACGGTTTAGATCCTGAAAAACGTTTTAATGTTTCAGAAGAAGTATACGAAA
TTTTCCAAAATACTATGTTAAAACGTGCTAATGAAGATGAATCTCGATGGAATTCATTATTAGAAAAATATGCAGAAACA
TATCCTGAATTAGCAGAAGAATTTAAATTAGCGATTAGTGGTAAATTGCCTAAAAATTATAAGGATGAATTACCACGTTT
TGAACTTGGTCATAATGGTGCATCTCGTGCTGATTCTGGTACTGTTATTCAAGCAATCAGTAAAACTGTCCCTTCATTCT
TTGGTGGATCAGCAGACCTTGCTGGTTCAAACAAATCCAATGTAAATGATGCAACAGATTATAGTTCTGAAACACCTGAA
GGTAAAAATGTGTGGTTTGGTGTACGTGAATTTGCTATGGGTGCTGCTGTAAATGGTATGGCTGCACATGGAGGTTTACA
TCCATATGGTGCAACATTCTTCGTATTTAGTGATTATTTAAAACCAGCATTACGTTTATCATCAATTATGGGATTAAATG
CAACGTTCATCTTCACACATGATTCAATTGCAGTAGGTGAAGATGGTCCTACTCATGAACCAATTGAACAATTAGCTGGA
TTAAGAGCTATTCCAAATATGAATGTTATCCGTCCTGCTGATGGTAATGAAACAAGAATAGCATGGGAAGTTGCCTTAGA
ATCTGAATCTACACCTACTTCATTAGTATTGACACGTCAAAACTTACCGGTTTTAGATGTACCAGAAGATGTAGTTGAAG
AAGGCGTTCGAAAAGGTGCCTATACAGTTTATGGCTCTGAAGAGACACCAGAATTCCTATTATTAGCTTCAGGTTCAGAA
GTTAGTCTTGCAGTTGAAGCTGCTAAAGATCTTGAAAAACAAGGTAAATCAGTGCGTGTTGTTTCAATGCCTAACTGGAA
TGCATTTGAACAACAATCTGAAGAATATAAAGAATCAGTTATTCCATCAAGCGTAACAAAACGTGTTGCGATTGAAATGG
CTTCACCGCTTGGATGGCATAAATATGTAGGTATTGCAGGTAAAGTTATTGCTATTGACGGCTTTGGCGCAAGTGCACCT
GGCGATCTAGTAGTTGAAAAATATGGCTTTACAAAAGAAAATATCTTAAACCAAGTTATGAGCTTATAA

Domains

Predicted by InterProScan.

Transketolase, pyrimidine binding domain (Transket_pyr)

(359-523)

Transketolase, thiamine diphosphate binding domain (Transketolase_N)

(6-337)

Transketolase, C-terminal domain (Transketolase_C)

(548-655)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recP/tkt Streptococcus pneumoniae TIGR4

55.105

100

0.554