Detailed information NTG0630872

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: LPH40_RS05485
• Genome accession: NZ_CP087685
• Coordinates: 1357525..1358937 (-)
• Length: 470 a.a.
• NCBI ID: WP_038269641.1
• Uniprot ID: Z9JNG2
• Organism: Xylella taiwanensis strain PLS4A
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 1352525..1363937

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LPH40_RS05460 (LPH40_05460)	-	1353012..1353218 (-)	207	WP_152536555.1	hypothetical protein	-
LPH40_RS05465 (LPH40_05465)	-	1353615..1354157 (+)	543	WP_038269649.1	pilin	-
LPH40_RS05470 (LPH40_05470)	-	1354361..1354837 (+)	477	WP_038269647.1	pilin	-
LPH40_RS05475 (LPH40_05475)	-	1355219..1355584 (+)	366	WP_038269645.1	hypothetical protein	-
LPH40_RS05480 (LPH40_05480)	pilB	1355700..1357433 (+)	1734	WP_038269643.1	type IV-A pilus assembly ATPase PilB	Machinery gene
LPH40_RS05485 (LPH40_05485)	pilR	1357525..1358937 (-)	1413	WP_038269641.1	sigma-54 dependent transcriptional regulator	Regulator
LPH40_RS05490 (LPH40_05490)	-	1359106..1360716 (-)	1611	WP_038269639.1	ATP-binding protein	-
LPH40_RS05495 (LPH40_05495)	sucC	1360972..1362135 (+)	1164	WP_038269637.1	ADP-forming succinate--CoA ligase subunit beta	-
LPH40_RS05500 (LPH40_05500)	sucD	1362164..1363036 (+)	873	WP_038269635.1	succinate--CoA ligase subunit alpha	-

Sequence

Protein

• Length: 470 a.a.
• Molecular weight: 51178.79 Da
• Isoelectric Point: 6.5626

>NTDB_id=630872 LPH40_RS05485 WP_038269641.1 1357525..1358937(-) (pilR) [Xylella taiwanensis strain PLS4A]
MNESRSALIVDDERDIRELLILTLGRMGLRISTAANLAEAHALLESDSFNLCITDMRLPDGSGIDLVNKIVRHYPRTPVA
MITAFGNMELAVEALKAGAFDFVSKPVDLNVLRGIVRHALELNNRDRTVVSTQPQGPDRRLLGESAPMAQLRATIAKVAR
SQAPVYILGESGVGKELVARTIHEQSVRAAGPFVPVNCGAIPADLMESEFFGHKKGSFTGAHTDKPGLFQSAGGGTLFLD
EIAELPLHMQVKLLRAIQEKSIRPIGAAAEVPVDVRILSATHKDLSDLIADGRFRHDLYYRINVIEIRVPPLRERTGDLP
HLAAAIVARLAHTNGRSIPLLSPSALEVLDHYPFPGNVRELENILERALALTEDDDIGAADLHLPQGGLHGQGSPLPVVH
TASPIVSVDPSVPAEDENTPAALPSYMEQLERAAIQKALEENRWNKTKTAAQLGITFRALRYKLKKLGME

Nucleotide

• Length: 1413 bp

>NTDB_id=630872 LPH40_RS05485 WP_038269641.1 1357525..1358937(-) (pilR) [Xylella taiwanensis strain PLS4A]
ATGAACGAATCCCGCAGTGCTCTCATCGTCGATGACGAGCGTGACATCCGTGAACTTTTAATCCTTACGCTAGGTCGTAT
GGGGCTTCGCATCAGCACGGCTGCTAATCTGGCAGAAGCGCACGCATTACTTGAATCTGATTCGTTCAACCTTTGCATCA
CTGATATGCGTTTACCTGACGGTAGTGGCATCGACTTGGTGAACAAGATCGTGCGCCACTACCCGCGTACCCCGGTGGCG
ATGATTACTGCTTTCGGCAATATGGAACTGGCTGTAGAAGCGCTCAAAGCAGGTGCTTTTGACTTCGTCAGCAAACCAGT
CGATTTAAACGTGCTGCGTGGCATCGTCCGCCATGCCTTGGAACTGAACAATCGCGACCGCACTGTCGTGTCAACTCAGC
CACAAGGTCCTGACCGACGTCTCCTTGGCGAATCCGCACCCATGGCCCAGCTTCGGGCCACCATCGCTAAAGTGGCGCGT
AGCCAAGCCCCGGTTTATATCCTTGGTGAATCCGGAGTTGGCAAAGAACTGGTTGCACGCACCATCCACGAACAGAGCGT
GCGTGCGGCTGGACCGTTCGTCCCGGTCAATTGTGGTGCGATCCCTGCGGATCTCATGGAAAGCGAATTTTTCGGCCACA
AGAAAGGGAGTTTCACCGGTGCTCATACTGATAAACCCGGTTTATTTCAAAGTGCTGGCGGAGGTACTTTATTCCTGGAC
GAAATTGCCGAATTACCGTTGCACATGCAGGTCAAACTACTGCGTGCGATTCAGGAGAAATCGATACGCCCCATCGGGGC
AGCCGCCGAAGTGCCAGTAGATGTGCGTATTTTGTCGGCGACCCACAAAGATCTCAGTGACCTGATTGCCGATGGCCGCT
TCCGCCACGACTTGTACTACCGCATCAATGTGATCGAAATACGTGTCCCGCCGCTGCGGGAGCGCACTGGTGATTTGCCA
CATCTGGCCGCAGCCATTGTGGCTCGCTTGGCGCACACCAATGGGCGGTCGATCCCGTTGCTCTCACCCTCCGCCTTAGA
GGTCTTAGATCATTATCCGTTCCCGGGTAACGTGCGTGAATTGGAGAACATTCTGGAGCGTGCTCTGGCGCTGACCGAAG
ACGATGATATCGGTGCTGCGGATCTGCACCTGCCCCAAGGCGGTCTCCATGGACAGGGATCGCCGCTTCCAGTAGTGCAC
ACAGCTTCCCCAATTGTGTCTGTAGACCCATCAGTACCGGCGGAGGATGAGAACACACCCGCTGCCCTGCCGTCGTACAT
GGAGCAGTTAGAACGTGCTGCCATTCAGAAAGCTCTGGAAGAGAATCGCTGGAATAAGACAAAGACAGCCGCTCAACTCG
GCATCACCTTCCGTGCGTTGCGTTACAAACTAAAGAAGCTGGGGATGGAGTGA

Domains

Predicted by InterproScan.

• Sigma-54 interaction domain (Sigma54_activat) (142-307)

• Bacterial regulatory protein, Fis family (HTH_8) (427-467)

• Response regulator receiver domain (Response_reg) (8-116)

3D structure

• AlphaFold DB: Z9JNG2

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	58.672	99.362	0.583
pilR	Acinetobacter baumannii strain A118	47.246	100	0.474