Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   Q783_RS02870 Genome accession   NC_022606
Coordinates   590412..592130 (+) Length   572 a.a.
NCBI ID   WP_023177176.1    Uniprot ID   -
Organism   Carnobacterium inhibens subsp. gilichinskyi     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 585412..597130
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q783_RS02840 (Q783_02880) - 585486..586355 (+) 870 WP_023177169.1 bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase -
  Q783_RS02845 (Q783_02885) xseA 586429..587769 (+) 1341 WP_043945166.1 exodeoxyribonuclease VII large subunit -
  Q783_RS02850 (Q783_02890) - 587766..588002 (+) 237 WP_023177171.1 exodeoxyribonuclease VII small subunit -
  Q783_RS02855 (Q783_02895) - 588018..588917 (+) 900 WP_023177172.1 polyprenyl synthetase family protein -
  Q783_RS02860 (Q783_02900) - 588936..589763 (+) 828 WP_023177173.1 TlyA family RNA methyltransferase -
  Q783_RS02865 (Q783_02905) argR 589928..590377 (+) 450 WP_023177174.1 arginine repressor -
  Q783_RS02870 (Q783_02910) recN 590412..592130 (+) 1719 WP_023177176.1 DNA repair protein RecN Machinery gene
  Q783_RS02875 (Q783_02915) msrA 592215..592865 (-) 651 WP_023177178.1 peptide-methionine (S)-S-oxide reductase MsrA -
  Q783_RS12030 (Q783_02920) - 592938..593096 (-) 159 WP_144080629.1 DUF4044 domain-containing protein -
  Q783_RS02880 (Q783_02925) - 593143..594099 (-) 957 WP_023177182.1 magnesium transporter CorA family protein -
  Q783_RS02885 (Q783_02930) gndA 594380..595813 (+) 1434 WP_023177183.1 NADP-dependent phosphogluconate dehydrogenase -
  Q783_RS02890 (Q783_02935) - 596102..596794 (+) 693 WP_023177185.1 response regulator transcription factor -

Sequence

Protein


Download         Length: 572 a.a.        Molecular weight: 64759.79 Da        Isoelectric Point: 4.8234

>NTDB_id=63087 Q783_RS02870 WP_023177176.1 590412..592130(+) (recN) [Carnobacterium inhibens subsp. gilichinskyi]
MLQELTIKDFAIIQDLNLSFNRGMTVLTGETGAGKSIIIDAVGLLAGGRGSSEFIRHGATKCVLEALFSLDGNPGTYELL
KTYGIDSDEDTVIIQRDIHRSGKSVCRINGRLVTIAILRLIGESIIDIHGQNEHQELMNPERHLSMLDQFGDKELFLLKK
SYQETYTRYRQVKKAYDKWQNGEQELAQRLDMLQYQTNEIEMAELLDGEEEELLEEKNLLLNYQKIMSALSISYDVLQGD
DVNGIDLIGNAMTEMSSLEDIDDKFKNLSEAISSSYFQLQEAASDILRELDQMAYDEDRLNEIEKRLEIIKQLKRKYGDS
IGEIKSYYEKIAAELEQILNRENHLTNMTDELARLSEELVKRGSQLSKKRRKVAKDIEQSIHEQLKELYMEKVVFEVQFF
KTVATFSSEGAHESGFDEVEFYIATNMGEPLKPLAKVASGGELSRMMLAMKTIFSKSQGITSIIFDEVDTGVSGRVAQAI
ANKIYMVAVHSQVLCITHLPQVAAMADNHLYISKSIENDRTKTHVNALETAEKIEEIARMLAGTEITKLTLEHAKELTVL
AKTERQKQKQIS

Nucleotide


Download         Length: 1719 bp        

>NTDB_id=63087 Q783_RS02870 WP_023177176.1 590412..592130(+) (recN) [Carnobacterium inhibens subsp. gilichinskyi]
GTGCTTCAAGAATTAACCATTAAGGATTTTGCTATCATCCAGGATTTAAATCTTAGTTTTAACCGTGGTATGACTGTTTT
AACTGGTGAAACAGGAGCAGGAAAATCGATTATTATTGATGCTGTTGGATTACTTGCTGGAGGAAGAGGATCTAGTGAAT
TTATCCGCCATGGTGCAACTAAATGTGTATTAGAAGCCTTATTTTCATTAGATGGAAATCCCGGAACATATGAATTGCTA
AAAACTTATGGCATCGACAGCGATGAAGATACGGTAATTATCCAACGAGATATCCATCGCAGTGGAAAAAGTGTTTGTCG
CATTAATGGTCGTCTAGTAACAATAGCCATTTTGCGTTTGATTGGAGAATCGATTATTGATATTCATGGTCAAAATGAGC
ACCAAGAATTAATGAATCCAGAACGCCATTTGAGTATGTTAGATCAATTTGGCGATAAAGAACTATTCTTGCTAAAGAAA
AGTTATCAGGAAACCTATACGCGCTATAGACAGGTAAAAAAAGCTTATGATAAGTGGCAAAATGGAGAACAAGAATTAGC
TCAACGGTTAGATATGCTGCAATATCAAACAAATGAAATTGAAATGGCTGAACTTCTCGATGGAGAAGAAGAAGAATTAC
TTGAAGAAAAGAACTTGTTATTAAATTACCAAAAAATTATGTCAGCGTTGTCTATCAGTTATGACGTATTGCAAGGTGAT
GACGTAAATGGAATCGATTTGATTGGAAATGCTATGACTGAAATGAGTTCTTTGGAAGACATAGATGATAAATTTAAAAA
CTTATCAGAAGCCATATCAAGCAGCTATTTTCAACTTCAAGAAGCAGCTAGCGATATTTTAAGAGAACTCGATCAAATGG
CTTATGATGAAGATCGGTTAAATGAAATTGAAAAAAGATTAGAGATCATTAAACAATTGAAACGAAAATATGGTGATTCC
ATCGGAGAAATTAAAAGTTATTATGAAAAAATCGCGGCAGAACTAGAACAAATCTTGAATCGGGAAAACCATTTGACGAA
TATGACGGATGAGTTAGCTCGTTTATCGGAAGAATTGGTCAAACGAGGCAGTCAACTCTCTAAAAAGCGTCGAAAAGTAG
CTAAAGACATAGAACAATCCATTCATGAACAGCTTAAAGAATTGTATATGGAAAAAGTTGTATTTGAAGTTCAGTTTTTC
AAAACAGTAGCAACTTTTTCGAGTGAAGGAGCACATGAATCTGGTTTTGATGAAGTAGAATTTTATATTGCTACAAATAT
GGGTGAACCGTTAAAACCATTAGCTAAAGTGGCATCTGGAGGAGAATTGTCTCGAATGATGCTAGCCATGAAGACTATTT
TTTCAAAATCACAAGGCATTACCAGCATTATATTTGATGAAGTGGATACAGGGGTTAGTGGACGAGTTGCACAAGCTATT
GCAAACAAGATCTATATGGTTGCAGTCCATTCACAAGTTCTATGTATTACACACTTGCCTCAAGTGGCAGCGATGGCAGA
TAATCATTTATACATTTCTAAAAGCATTGAAAATGATCGAACAAAAACGCATGTAAATGCTTTGGAAACTGCAGAAAAGA
TAGAAGAAATTGCGCGAATGTTAGCTGGAACTGAAATTACAAAACTGACTTTAGAGCATGCGAAGGAATTAACCGTGTTA
GCTAAAACAGAAAGACAAAAACAGAAACAAATTAGTTGA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-514)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

50.353

98.951

0.498

Multiple sequence alignment