Detailed information NTG0630866

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: LPH44_RS11875
• Genome accession: NZ_CP087683
• Coordinates: 2812242..2813654 (-)
• Length: 470 a.a.
• NCBI ID: WP_038269641.1
• Uniprot ID: Z9JNG2
• Organism: Xylella taiwanensis strain PLS1135
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 2807242..2818654

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LPH44_RS11850 (LPH44_11850)	-	2807729..2807935 (-)	207	WP_152536555.1	hypothetical protein	-
LPH44_RS11855 (LPH44_11855)	-	2808332..2808874 (+)	543	WP_038269649.1	pilin	-
LPH44_RS11860 (LPH44_11860)	-	2809078..2809554 (+)	477	WP_038269647.1	pilin	-
LPH44_RS11865 (LPH44_11865)	-	2809936..2810301 (+)	366	WP_038269645.1	hypothetical protein	-
LPH44_RS11870 (LPH44_11870)	pilB	2810417..2812150 (+)	1734	WP_038269643.1	type IV-A pilus assembly ATPase PilB	Machinery gene
LPH44_RS11875 (LPH44_11875)	pilR	2812242..2813654 (-)	1413	WP_038269641.1	sigma-54 dependent transcriptional regulator	Regulator
LPH44_RS11880 (LPH44_11880)	-	2813823..2815433 (-)	1611	WP_038269639.1	ATP-binding protein	-
LPH44_RS11885 (LPH44_11885)	sucC	2815689..2816852 (+)	1164	WP_038269637.1	ADP-forming succinate--CoA ligase subunit beta	-
LPH44_RS11890 (LPH44_11890)	sucD	2816881..2817753 (+)	873	WP_038269635.1	succinate--CoA ligase subunit alpha	-

Sequence

Protein

• Length: 470 a.a.
• Molecular weight: 51178.79 Da
• Isoelectric Point: 6.5626

>NTDB_id=630866 LPH44_RS11875 WP_038269641.1 2812242..2813654(-) (pilR) [Xylella taiwanensis strain PLS1135]
MNESRSALIVDDERDIRELLILTLGRMGLRISTAANLAEAHALLESDSFNLCITDMRLPDGSGIDLVNKIVRHYPRTPVA
MITAFGNMELAVEALKAGAFDFVSKPVDLNVLRGIVRHALELNNRDRTVVSTQPQGPDRRLLGESAPMAQLRATIAKVAR
SQAPVYILGESGVGKELVARTIHEQSVRAAGPFVPVNCGAIPADLMESEFFGHKKGSFTGAHTDKPGLFQSAGGGTLFLD
EIAELPLHMQVKLLRAIQEKSIRPIGAAAEVPVDVRILSATHKDLSDLIADGRFRHDLYYRINVIEIRVPPLRERTGDLP
HLAAAIVARLAHTNGRSIPLLSPSALEVLDHYPFPGNVRELENILERALALTEDDDIGAADLHLPQGGLHGQGSPLPVVH
TASPIVSVDPSVPAEDENTPAALPSYMEQLERAAIQKALEENRWNKTKTAAQLGITFRALRYKLKKLGME

Nucleotide

• Length: 1413 bp

>NTDB_id=630866 LPH44_RS11875 WP_038269641.1 2812242..2813654(-) (pilR) [Xylella taiwanensis strain PLS1135]
ATGAACGAATCCCGCAGTGCTCTCATCGTCGATGACGAGCGTGACATCCGTGAACTTTTAATCCTTACGCTAGGTCGTAT
GGGGCTTCGCATCAGCACGGCTGCTAATCTGGCAGAAGCGCACGCATTACTTGAATCTGATTCGTTCAACCTTTGCATCA
CTGATATGCGTTTACCTGACGGTAGTGGCATCGACTTGGTGAACAAGATCGTGCGCCACTACCCGCGTACCCCGGTGGCG
ATGATTACTGCTTTCGGCAATATGGAACTGGCTGTAGAAGCGCTCAAAGCAGGTGCTTTTGACTTCGTCAGCAAACCAGT
CGATTTAAACGTGCTGCGTGGCATCGTCCGCCATGCCTTGGAACTGAACAATCGCGACCGCACTGTCGTGTCAACTCAGC
CACAAGGTCCTGACCGACGTCTCCTTGGCGAATCCGCACCCATGGCCCAGCTTCGGGCCACCATCGCTAAAGTGGCGCGT
AGCCAAGCCCCGGTTTATATCCTTGGTGAATCCGGAGTTGGCAAAGAACTGGTTGCACGCACCATCCACGAACAGAGCGT
GCGTGCGGCTGGACCGTTCGTCCCGGTCAATTGTGGTGCGATCCCTGCGGATCTCATGGAAAGCGAATTTTTCGGCCACA
AGAAAGGGAGTTTCACCGGTGCTCATACTGATAAACCCGGTTTATTTCAAAGTGCTGGCGGAGGTACTTTATTCCTGGAC
GAAATTGCCGAATTACCGTTGCACATGCAGGTCAAACTACTGCGTGCGATTCAGGAGAAATCGATACGCCCCATCGGGGC
AGCCGCCGAAGTGCCAGTAGATGTGCGTATTTTGTCGGCGACCCACAAAGATCTCAGTGACCTGATTGCCGATGGCCGCT
TCCGCCACGACTTGTACTACCGCATCAATGTGATCGAAATACGTGTCCCGCCGCTGCGGGAGCGCACTGGTGATTTGCCA
CATCTGGCCGCAGCCATTGTGGCTCGCTTGGCGCACACCAATGGGCGGTCGATCCCGTTGCTCTCACCCTCCGCCTTAGA
GGTCTTAGATCATTATCCGTTCCCGGGTAACGTGCGTGAATTGGAGAACATTCTGGAGCGTGCTCTGGCGCTGACCGAAG
ACGATGATATCGGTGCTGCGGATCTGCACCTGCCCCAAGGCGGTCTCCATGGACAGGGATCGCCGCTTCCAGTAGTGCAC
ACAGCTTCCCCAATTGTGTCTGTAGACCCATCAGTACCGGCGGAGGATGAGAACACACCCGCTGCCCTGCCGTCGTACAT
GGAGCAGTTAGAACGTGCTGCCATTCAGAAAGCTCTGGAAGAGAATCGCTGGAATAAGACAAAGACAGCCGCTCAACTCG
GCATCACCTTCCGTGCGTTGCGTTACAAACTAAAGAAGCTGGGGATGGAGTGA

Domains

Predicted by InterproScan.

• Sigma-54 interaction domain (Sigma54_activat) (142-307)

• Bacterial regulatory protein, Fis family (HTH_8) (427-467)

• Response regulator receiver domain (Response_reg) (8-116)

3D structure

• AlphaFold DB: Z9JNG2

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	58.672	99.362	0.583
pilR	Acinetobacter baumannii strain A118	47.246	100	0.474