Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   FYK59_RS12335 Genome accession   NZ_AP019853
Coordinates   2103155..2103640 (-) Length   161 a.a.
NCBI ID   WP_125121586.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain SS3160     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2098155..2108640
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FYK59_RS12715 (NGSS3160_21080) pilE 2098755..2098964 (-) 210 WP_416046533.1 pilin Machinery gene
  FYK59_RS12720 (NGSS3160_21090) pilE 2098946..2099257 (-) 312 WP_126321990.1 pilin Machinery gene
  FYK59_RS12325 - 2100071..2100174 (-) 104 Protein_2128 pilin -
  FYK59_RS10955 - 2100312..2100653 (-) 342 Protein_2129 pilin -
  FYK59_RS12330 - 2100693..2101079 (-) 387 Protein_2130 pilin -
  FYK59_RS10965 (NGSS3160_21110) lpxC 2101221..2102144 (-) 924 WP_003687007.1 UDP-3-O-acyl-N-acetylglucosamine deacetylase -
  FYK59_RS10970 (NGSS3160_21120) - 2102638..2103023 (-) 386 Protein_2132 pilin -
  FYK59_RS12335 (NGSS3160_21130) pilE 2103155..2103640 (-) 486 WP_125121586.1 pilin Machinery gene
  FYK59_RS10985 - 2103697..2104044 (-) 348 Protein_2134 pilin -
  FYK59_RS10990 - 2104097..2104493 (-) 397 Protein_2135 pilin -
  FYK59_RS10995 (NGSS3160_21150) - 2104625..2105064 (-) 440 Protein_2136 pilin -
  FYK59_RS12510 (NGSS3160_21160) - 2105590..2106318 (-) 729 WP_353114220.1 pilin -
  FYK59_RS11010 (NGSS3160_21170) pilE 2106242..2106559 (-) 318 WP_003697861.1 pilin Machinery gene
  FYK59_RS11015 - 2106889..2107080 (+) 192 WP_014580443.1 hypothetical protein -
  FYK59_RS11020 (NGSS3160_21180) - 2107144..2107833 (-) 690 WP_003696506.1 SprT family zinc-dependent metalloprotease -
  FYK59_RS11025 (NGSS3160_21190) - 2107830..2108573 (-) 744 WP_003687014.1 lysophospholipid acyltransferase family protein -

Sequence

Protein


Download         Length: 161 a.a.        Molecular weight: 17314.41 Da        Isoelectric Point: 9.7934

>NTDB_id=63085 FYK59_RS12335 WP_125121586.1 2103155..2103640(-) (pilE) [Neisseria gonorrhoeae strain SS3160]
MASSPTDIKGKYVKSVTVAKGVVTAQMASTGVNKEIQGKKLSLWGRRENGSVKWFCGQPVTRTDKANDDVTDDATATMNS
SNVNKEIQGKKLSLWARRQDGSVKWFCGQPVKRDNANADTVTADATGNDGKIDTKHLPSTCRDAASAGCIETPPTAFYKN
T

Nucleotide


Download         Length: 486 bp        

>NTDB_id=63085 FYK59_RS12335 WP_125121586.1 2103155..2103640(-) (pilE) [Neisseria gonorrhoeae strain SS3160]
GTGGCATCCTCCCCCACCGACATCAAAGGCAAATATGTTAAAAGCGTTACGGTCGCAAAAGGCGTCGTTACCGCCCAAAT
GGCTTCAACCGGCGTAAACAAAGAAATCCAAGGCAAAAAACTCTCCCTGTGGGGCAGGCGTGAAAACGGTTCGGTAAAAT
GGTTCTGCGGACAGCCGGTTACGCGCACCGACAAAGCCAACGACGACGTTACCGACGACGCCACCGCCACAATGAATTCA
AGCAACGTAAACAAAGAAATCCAAGGCAAAAAACTCTCCCTGTGGGCCAGGCGTCAAGACGGTTCGGTAAAATGGTTCTG
CGGACAGCCGGTTAAGCGCGACAACGCCAACGCCGACACCGTCACCGCCGACGCCACCGGCAACGACGGCAAAATCGACA
CCAAGCACCTGCCGTCAACCTGCCGCGACGCAGCATCTGCCGGTTGCATAGAAACACCACCTACGGCTTTCTATAAAAAT
ACCTAA

Domains

Predicted by InterProScan.

Pilin (bacterial filament) (Pilin)

(3-61)

Pilin (bacterial filament) (Pilin)

(72-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Neisseria gonorrhoeae MS11

49.66

91.304

0.453