Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   LPH42_RS05500 Genome accession   NZ_CP087678
Coordinates   1357322..1358734 (-) Length   470 a.a.
NCBI ID   WP_038269641.1    Uniprot ID   Z9JNG2
Organism   Xylella taiwanensis strain PLS206     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1352322..1363734
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LPH42_RS05475 (LPH42_05475) - 1352809..1353015 (-) 207 WP_152536555.1 hypothetical protein -
  LPH42_RS05480 (LPH42_05480) - 1353412..1353954 (+) 543 WP_038269649.1 pilin -
  LPH42_RS05485 (LPH42_05485) - 1354158..1354634 (+) 477 WP_038269647.1 pilin -
  LPH42_RS05490 (LPH42_05490) - 1355016..1355381 (+) 366 WP_038269645.1 hypothetical protein -
  LPH42_RS05495 (LPH42_05495) pilB 1355497..1357230 (+) 1734 WP_038269643.1 type IV-A pilus assembly ATPase PilB Machinery gene
  LPH42_RS05500 (LPH42_05500) pilR 1357322..1358734 (-) 1413 WP_038269641.1 sigma-54 dependent transcriptional regulator Regulator
  LPH42_RS05505 (LPH42_05505) - 1358903..1360513 (-) 1611 WP_038269639.1 PAS domain-containing sensor histidine kinase -
  LPH42_RS05510 (LPH42_05510) sucC 1360769..1361932 (+) 1164 WP_038269637.1 ADP-forming succinate--CoA ligase subunit beta -
  LPH42_RS05515 (LPH42_05515) sucD 1361961..1362833 (+) 873 WP_038269635.1 succinate--CoA ligase subunit alpha -

Sequence

Protein


Download         Length: 470 a.a.        Molecular weight: 51178.79 Da        Isoelectric Point: 6.5626

>NTDB_id=630812 LPH42_RS05500 WP_038269641.1 1357322..1358734(-) (pilR) [Xylella taiwanensis strain PLS206]
MNESRSALIVDDERDIRELLILTLGRMGLRISTAANLAEAHALLESDSFNLCITDMRLPDGSGIDLVNKIVRHYPRTPVA
MITAFGNMELAVEALKAGAFDFVSKPVDLNVLRGIVRHALELNNRDRTVVSTQPQGPDRRLLGESAPMAQLRATIAKVAR
SQAPVYILGESGVGKELVARTIHEQSVRAAGPFVPVNCGAIPADLMESEFFGHKKGSFTGAHTDKPGLFQSAGGGTLFLD
EIAELPLHMQVKLLRAIQEKSIRPIGAAAEVPVDVRILSATHKDLSDLIADGRFRHDLYYRINVIEIRVPPLRERTGDLP
HLAAAIVARLAHTNGRSIPLLSPSALEVLDHYPFPGNVRELENILERALALTEDDDIGAADLHLPQGGLHGQGSPLPVVH
TASPIVSVDPSVPAEDENTPAALPSYMEQLERAAIQKALEENRWNKTKTAAQLGITFRALRYKLKKLGME

Nucleotide


Download         Length: 1413 bp        

>NTDB_id=630812 LPH42_RS05500 WP_038269641.1 1357322..1358734(-) (pilR) [Xylella taiwanensis strain PLS206]
ATGAACGAATCCCGCAGTGCTCTCATCGTCGATGACGAGCGTGACATCCGTGAACTTTTAATCCTTACGCTAGGTCGTAT
GGGGCTTCGCATCAGCACGGCTGCTAATCTGGCAGAAGCGCACGCATTACTTGAATCTGATTCGTTCAACCTTTGCATCA
CTGATATGCGTTTACCTGACGGTAGTGGCATCGACTTGGTGAACAAGATCGTGCGCCACTACCCGCGTACCCCGGTGGCG
ATGATTACTGCTTTCGGCAATATGGAACTGGCTGTAGAAGCGCTCAAAGCAGGTGCTTTTGACTTCGTCAGCAAACCAGT
CGATTTAAACGTGCTGCGTGGCATCGTCCGCCATGCCTTGGAACTGAACAATCGCGACCGCACTGTCGTGTCAACTCAGC
CACAAGGTCCTGACCGACGTCTCCTTGGCGAATCCGCACCCATGGCCCAGCTTCGGGCCACCATCGCTAAAGTGGCGCGT
AGCCAAGCCCCGGTTTATATCCTTGGTGAATCCGGAGTTGGCAAAGAACTGGTTGCACGCACCATCCACGAACAGAGCGT
GCGTGCGGCTGGACCGTTCGTCCCGGTCAATTGTGGTGCGATCCCTGCGGATCTCATGGAAAGCGAATTTTTCGGCCACA
AGAAAGGGAGTTTCACCGGTGCTCATACTGATAAACCCGGTTTATTTCAAAGTGCTGGCGGAGGTACTTTATTCCTGGAC
GAAATTGCCGAATTACCGTTGCACATGCAGGTCAAACTACTGCGTGCGATTCAGGAGAAATCGATACGCCCCATCGGGGC
AGCCGCCGAAGTGCCAGTAGATGTGCGTATTTTGTCGGCGACCCACAAAGATCTCAGTGACCTGATTGCCGATGGCCGCT
TCCGCCACGACTTGTACTACCGCATCAATGTGATCGAAATACGTGTCCCGCCGCTGCGGGAGCGCACTGGTGATTTGCCA
CATCTGGCCGCAGCCATTGTGGCTCGCTTGGCGCACACCAATGGGCGGTCGATCCCGTTGCTCTCACCCTCCGCCTTAGA
GGTCTTAGATCATTATCCGTTCCCGGGTAACGTGCGTGAATTGGAGAACATTCTGGAGCGTGCTCTGGCGCTGACCGAAG
ACGATGATATCGGTGCTGCGGATCTGCACCTGCCCCAAGGCGGTCTCCATGGACAGGGATCGCCGCTTCCAGTAGTGCAC
ACAGCTTCCCCAATTGTGTCTGTAGACCCATCAGTACCGGCGGAGGATGAGAACACACCCGCTGCCCTGCCGTCGTACAT
GGAGCAGTTAGAACGTGCTGCCATTCAGAAAGCTCTGGAAGAGAATCGCTGGAATAAGACAAAGACAGCCGCTCAACTCG
GCATCACCTTCCGTGCGTTGCGTTACAAACTAAAGAAGCTGGGGATGGAGTGA

Domains

Predicted by InterproScan.

Sigma-54 interaction domain (Sigma54_activat)

(142-307)

Bacterial regulatory protein, Fis family (HTH_8)

(427-467)

Response regulator receiver domain (Response_reg)

(8-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Z9JNG2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

58.672

99.362

0.583
  pilR Acinetobacter baumannii strain A118

47.246

100

0.474