Detailed information NTG0630783

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: LPH43_RS05720
• Genome accession: NZ_CP087676
• Coordinates: 1395659..1397071 (-)
• Length: 470 a.a.
• NCBI ID: WP_038269641.1
• Uniprot ID: Z9JNG2
• Organism: Xylella taiwanensis strain PLS396
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 1390659..1402071

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LPH43_RS05695 (LPH43_05695)	-	1391146..1391352 (-)	207	WP_152536555.1	hypothetical protein	-
LPH43_RS05700 (LPH43_05700)	-	1391749..1392291 (+)	543	WP_038269649.1	pilin	-
LPH43_RS05705 (LPH43_05705)	-	1392495..1392971 (+)	477	WP_038269647.1	pilin	-
LPH43_RS05710 (LPH43_05710)	-	1393416..1393718 (+)	303	WP_162814113.1	hypothetical protein	-
LPH43_RS05715 (LPH43_05715)	pilB	1393834..1395567 (+)	1734	WP_038269643.1	type IV-A pilus assembly ATPase PilB	Machinery gene
LPH43_RS05720 (LPH43_05720)	pilR	1395659..1397071 (-)	1413	WP_038269641.1	sigma-54 dependent transcriptional regulator	Regulator
LPH43_RS05725 (LPH43_05725)	-	1397240..1398850 (-)	1611	WP_038269639.1	ATP-binding protein	-
LPH43_RS05730 (LPH43_05730)	sucC	1399106..1400269 (+)	1164	WP_038269637.1	ADP-forming succinate--CoA ligase subunit beta	-
LPH43_RS05735 (LPH43_05735)	sucD	1400298..1401170 (+)	873	WP_038269635.1	succinate--CoA ligase subunit alpha	-

Sequence

Protein

• Length: 470 a.a.
• Molecular weight: 51178.79 Da
• Isoelectric Point: 6.5626

>NTDB_id=630783 LPH43_RS05720 WP_038269641.1 1395659..1397071(-) (pilR) [Xylella taiwanensis strain PLS396]
MNESRSALIVDDERDIRELLILTLGRMGLRISTAANLAEAHALLESDSFNLCITDMRLPDGSGIDLVNKIVRHYPRTPVA
MITAFGNMELAVEALKAGAFDFVSKPVDLNVLRGIVRHALELNNRDRTVVSTQPQGPDRRLLGESAPMAQLRATIAKVAR
SQAPVYILGESGVGKELVARTIHEQSVRAAGPFVPVNCGAIPADLMESEFFGHKKGSFTGAHTDKPGLFQSAGGGTLFLD
EIAELPLHMQVKLLRAIQEKSIRPIGAAAEVPVDVRILSATHKDLSDLIADGRFRHDLYYRINVIEIRVPPLRERTGDLP
HLAAAIVARLAHTNGRSIPLLSPSALEVLDHYPFPGNVRELENILERALALTEDDDIGAADLHLPQGGLHGQGSPLPVVH
TASPIVSVDPSVPAEDENTPAALPSYMEQLERAAIQKALEENRWNKTKTAAQLGITFRALRYKLKKLGME

Nucleotide

• Length: 1413 bp

>NTDB_id=630783 LPH43_RS05720 WP_038269641.1 1395659..1397071(-) (pilR) [Xylella taiwanensis strain PLS396]
ATGAACGAATCCCGCAGTGCTCTCATCGTCGATGACGAGCGTGACATCCGTGAACTTTTAATCCTTACGCTAGGTCGTAT
GGGGCTTCGCATCAGCACGGCTGCTAATCTGGCAGAAGCGCACGCATTACTTGAATCTGATTCGTTCAACCTTTGCATCA
CTGATATGCGTTTACCTGACGGTAGTGGCATCGACTTGGTGAACAAGATCGTGCGCCACTACCCGCGTACCCCGGTGGCG
ATGATTACTGCTTTCGGCAATATGGAACTGGCTGTAGAAGCGCTCAAAGCAGGTGCTTTTGACTTCGTCAGCAAACCAGT
CGATTTAAACGTGCTGCGTGGCATCGTCCGCCATGCCTTGGAACTGAACAATCGCGACCGCACTGTCGTGTCAACTCAGC
CACAAGGTCCTGACCGACGTCTCCTTGGCGAATCCGCACCCATGGCCCAGCTTCGGGCCACCATCGCTAAAGTGGCGCGT
AGCCAAGCCCCGGTTTATATCCTTGGTGAATCCGGAGTTGGCAAAGAACTGGTTGCACGCACCATCCACGAACAGAGCGT
GCGTGCGGCTGGACCGTTCGTCCCGGTCAATTGTGGTGCGATCCCTGCGGATCTCATGGAAAGCGAATTTTTCGGCCACA
AGAAAGGGAGTTTCACCGGTGCTCATACTGATAAACCCGGTTTATTTCAAAGTGCTGGCGGAGGTACTTTATTCCTGGAC
GAAATTGCCGAATTACCGTTGCACATGCAGGTCAAACTACTGCGTGCGATTCAGGAGAAATCGATACGCCCCATCGGGGC
AGCCGCCGAAGTGCCAGTAGATGTGCGTATTTTGTCGGCGACCCACAAAGATCTCAGTGACCTGATTGCCGATGGCCGCT
TCCGCCACGACTTGTACTACCGCATCAATGTGATCGAAATACGTGTCCCGCCGCTGCGGGAGCGCACTGGTGATTTGCCA
CATCTGGCCGCAGCCATTGTGGCTCGCTTGGCGCACACCAATGGGCGGTCGATCCCGTTGCTCTCACCCTCCGCCTTAGA
GGTCTTAGATCATTATCCGTTCCCGGGTAACGTGCGTGAATTGGAGAACATTCTGGAGCGTGCTCTGGCGCTGACCGAAG
ACGATGATATCGGTGCTGCGGATCTGCACCTGCCCCAAGGCGGTCTCCATGGACAGGGATCGCCGCTTCCAGTAGTGCAC
ACAGCTTCCCCAATTGTGTCTGTAGACCCATCAGTACCGGCGGAGGATGAGAACACACCCGCTGCCCTGCCGTCGTACAT
GGAGCAGTTAGAACGTGCTGCCATTCAGAAAGCTCTGGAAGAGAATCGCTGGAATAAGACAAAGACAGCCGCTCAACTCG
GCATCACCTTCCGTGCGTTGCGTTACAAACTAAAGAAGCTGGGGATGGAGTGA

Domains

Predicted by InterproScan.

• Sigma-54 interaction domain (Sigma54_activat) (142-307)

• Bacterial regulatory protein, Fis family (HTH_8) (427-467)

• Response regulator receiver domain (Response_reg) (8-116)

3D structure

• AlphaFold DB: Z9JNG2

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	58.672	99.362	0.583
pilR	Acinetobacter baumannii strain A118	47.246	100	0.474