Detailed information    

insolico Bioinformatically predicted

Overview

Name   xcpV   Type   Machinery gene
Locus tag   LOZ89_RS08250 Genome accession   NZ_CP087594
Coordinates   1717757..1718137 (+) Length   126 a.a.
NCBI ID   WP_000836911.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain SHOU-Ab01     
Function   pseudopilus assembly (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1712757..1723137
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LOZ89_RS08220 (LOZ89_08220) kdsB 1713660..1714421 (+) 762 WP_000680692.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  LOZ89_RS08225 (LOZ89_08225) - 1714433..1715413 (+) 981 WP_001075416.1 DNA polymerase III subunit delta' -
  LOZ89_RS08230 (LOZ89_08230) - 1715425..1715766 (+) 342 WP_001183024.1 PilZ domain-containing protein -
  LOZ89_RS08235 (LOZ89_08235) - 1715784..1716557 (+) 774 WP_000497302.1 TatD family hydrolase -
  LOZ89_RS08240 (LOZ89_08240) - 1716595..1717203 (+) 609 WP_000375838.1 TetR/AcrR family transcriptional regulator -
  LOZ89_RS08245 (LOZ89_08245) - 1717213..1717767 (+) 555 WP_005128793.1 type II secretion system protein -
  LOZ89_RS08250 (LOZ89_08250) xcpV 1717757..1718137 (+) 381 WP_000836911.1 type II secretion system minor pseudopilin GspI Machinery gene
  LOZ89_RS08255 (LOZ89_08255) xcpW 1718137..1718838 (+) 702 WP_004747380.1 type II secretion system minor pseudopilin GspJ Machinery gene
  LOZ89_RS08260 (LOZ89_08260) gspK 1718838..1719797 (+) 960 WP_005128789.1 type II secretion system minor pseudopilin GspK -
  LOZ89_RS08265 (LOZ89_08265) - 1720027..1720623 (+) 597 WP_000908452.1 6-pyruvoyl trahydropterin synthase family protein -
  LOZ89_RS08270 (LOZ89_08270) ung 1720674..1721387 (+) 714 WP_001177528.1 uracil-DNA glycosylase -
  LOZ89_RS08275 (LOZ89_08275) - 1721384..1722508 (+) 1125 WP_001983908.1 enoyl-CoA hydratase/isomerase family protein -
  LOZ89_RS08280 (LOZ89_08280) tadA 1722515..1723018 (+) 504 WP_001997771.1 tRNA adenosine(34) deaminase TadA -

Sequence

Protein


Download         Length: 126 a.a.        Molecular weight: 13975.20 Da        Isoelectric Point: 9.8004

>NTDB_id=630310 LOZ89_RS08250 WP_000836911.1 1717757..1718137(+) (xcpV) [Acinetobacter baumannii strain SHOU-Ab01]
MKSKGFTLLEVMVALAIFAVAAVALTKVAMQYTQSTSNAILRTKAQFVAMNEVAMMEINQEWLQGTQSKQVTSQGETWQI
DKSAQSTISPNVQKIDLQVSLYDPDKGKVQNGITHMVFFNYPVKAK

Nucleotide


Download         Length: 381 bp        

>NTDB_id=630310 LOZ89_RS08250 WP_000836911.1 1717757..1718137(+) (xcpV) [Acinetobacter baumannii strain SHOU-Ab01]
ATGAAATCTAAAGGCTTTACCCTCTTAGAAGTTATGGTTGCTTTGGCAATCTTTGCTGTCGCAGCTGTCGCTTTAACTAA
AGTGGCAATGCAGTACACTCAGTCCACTTCAAATGCAATTTTGCGAACAAAAGCTCAGTTTGTAGCAATGAATGAAGTTG
CTATGATGGAGATTAATCAAGAATGGTTGCAAGGAACTCAAAGTAAGCAAGTAACTTCCCAAGGTGAAACTTGGCAAATT
GATAAGTCAGCTCAATCTACTATTAGCCCGAATGTTCAAAAAATTGATTTACAAGTGAGTTTGTATGATCCGGATAAGGG
AAAAGTACAAAATGGCATTACACATATGGTCTTTTTTAATTATCCAGTGAAAGCAAAATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein I (T2SSI)

(42-101)

Prokaryotic N-terminal methylation motif (N_methyl)

(2-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xcpV Acinetobacter baumannii D1279779

100

100

1