Detailed information NTG0630311

Bioinformatically predicted

Overview

• Name: xcpW
• Type: Machinery gene
• Locus tag: LOZ89_RS08255
• Genome accession: NZ_CP087594
• Coordinates: 1718137..1718838 (+)
• Length: 233 a.a.
• NCBI ID: WP_004747380.1
• Uniprot ID: A0A9E9PDK8
• Organism: Acinetobacter baumannii strain SHOU-Ab01
• Function: pseudopilus assembly (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1713137..1723838

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LOZ89_RS08220 (LOZ89_08220)	kdsB	1713660..1714421 (+)	762	WP_000680692.1	3-deoxy-manno-octulosonate cytidylyltransferase	-
LOZ89_RS08225 (LOZ89_08225)	-	1714433..1715413 (+)	981	WP_001075416.1	DNA polymerase III subunit delta'	-
LOZ89_RS08230 (LOZ89_08230)	-	1715425..1715766 (+)	342	WP_001183024.1	PilZ domain-containing protein	-
LOZ89_RS08235 (LOZ89_08235)	-	1715784..1716557 (+)	774	WP_000497302.1	TatD family hydrolase	-
LOZ89_RS08240 (LOZ89_08240)	-	1716595..1717203 (+)	609	WP_000375838.1	TetR/AcrR family transcriptional regulator	-
LOZ89_RS08245 (LOZ89_08245)	-	1717213..1717767 (+)	555	WP_005128793.1	type II secretion system protein	-
LOZ89_RS08250 (LOZ89_08250)	xcpV	1717757..1718137 (+)	381	WP_000836911.1	type II secretion system minor pseudopilin GspI	Machinery gene
LOZ89_RS08255 (LOZ89_08255)	xcpW	1718137..1718838 (+)	702	WP_004747380.1	type II secretion system minor pseudopilin GspJ	Machinery gene
LOZ89_RS08260 (LOZ89_08260)	gspK	1718838..1719797 (+)	960	WP_005128789.1	type II secretion system minor pseudopilin GspK	-
LOZ89_RS08265 (LOZ89_08265)	-	1720027..1720623 (+)	597	WP_000908452.1	6-pyruvoyl trahydropterin synthase family protein	-
LOZ89_RS08270 (LOZ89_08270)	ung	1720674..1721387 (+)	714	WP_001177528.1	uracil-DNA glycosylase	-
LOZ89_RS08275 (LOZ89_08275)	-	1721384..1722508 (+)	1125	WP_001983908.1	enoyl-CoA hydratase/isomerase family protein	-
LOZ89_RS08280 (LOZ89_08280)	tadA	1722515..1723018 (+)	504	WP_001997771.1	tRNA adenosine(34) deaminase TadA	-
LOZ89_RS08285 (LOZ89_08285)	-	1723088..1723531 (+)	444	WP_001246675.1	SRPBCC family protein	-

Sequence

Protein

• Length: 233 a.a.
• Molecular weight: 26629.59 Da
• Isoelectric Point: 9.5501

>NTDB_id=630311 LOZ89_RS08255 WP_004747380.1 1718137..1718838(+) (xcpW) [Acinetobacter baumannii strain SHOU-Ab01]
MIKNKYIHIRSFASRLAARSSSARLTRASGFTLVELLVAIAIFAVLSLLGWKIFDYLLKVRDRNAEHEVHLFELQDAYQQ
ILRDTLQIIPLSANQGGQLHPALEIDNQILRFSKAGVTDPLKQGLSPFERIEYRYDADQKKLYRLKYTNLNTSNREQPLS
STLLSQVDQYQIMVLTPQEVTKWPEVNIDPTKPNELKKLPKGIKIQLTVAGVNYEWIYSLNQGDLSLSQEGNS

Nucleotide

• Length: 702 bp

>NTDB_id=630311 LOZ89_RS08255 WP_004747380.1 1718137..1718838(+) (xcpW) [Acinetobacter baumannii strain SHOU-Ab01]
ATGATAAAAAATAAATATATTCACATCCGCAGCTTTGCTTCTCGCCTTGCAGCACGATCGAGCAGTGCTCGATTAACTCG
CGCCTCAGGATTTACTTTGGTTGAATTGTTAGTCGCGATCGCTATCTTTGCGGTTTTATCTTTATTGGGGTGGAAAATTT
TCGATTACTTGCTCAAAGTTCGTGATCGTAATGCCGAACATGAAGTGCATTTATTTGAATTACAAGATGCTTATCAACAA
ATTCTTCGTGATACTTTGCAGATTATCCCTTTATCCGCCAACCAAGGTGGGCAACTTCATCCAGCTTTAGAAATCGATAA
TCAAATTCTACGTTTTAGTAAAGCTGGGGTAACAGATCCTTTAAAACAAGGCTTATCACCATTTGAACGAATTGAATATC
GTTATGATGCAGATCAAAAAAAACTATATCGTCTTAAATATACAAATTTAAATACTTCGAACAGAGAGCAACCTTTATCG
AGTACTTTGTTAAGTCAAGTCGACCAATATCAGATTATGGTTTTGACTCCGCAAGAAGTCACAAAATGGCCCGAGGTTAA
TATTGATCCAACGAAACCTAATGAGTTAAAAAAATTACCGAAAGGGATAAAAATCCAACTTACAGTCGCTGGTGTAAATT
ATGAATGGATTTATAGCTTAAATCAGGGTGACTTATCGCTTTCACAGGAAGGTAATTCATAA

Domains

Predicted by InterproScan.

• Prokaryotic N-terminal methylation motif (N_methyl) (27-49)

• Type II secretion system (T2SS), protein J (T2SSJ) (83-212)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
xcpW	Acinetobacter baumannii D1279779	99.571	100	0.996