Detailed information    

insolico Bioinformatically predicted

Overview

Name   opaR   Type   Regulator
Locus tag   IUZ65_RS13740 Genome accession   NZ_CP087590
Coordinates   3017363..3017974 (+) Length   203 a.a.
NCBI ID   WP_195704256.1    Uniprot ID   -
Organism   Vibrio sp. VB16     
Function   regulation of Dns (predicted from homology)   
Competence regulation

Genomic Context

Location: 3012363..3022974
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IUZ65_RS13715 (IUZ65_013715) panC 3012789..3013661 (+) 873 WP_195704251.1 pantoate--beta-alanine ligase -
  IUZ65_RS13720 (IUZ65_013720) - 3013781..3014551 (-) 771 WP_195704252.1 ABC transporter permease -
  IUZ65_RS13725 (IUZ65_013725) - 3014558..3015475 (-) 918 WP_195704253.1 ABC transporter ATP-binding protein -
  IUZ65_RS13730 (IUZ65_013730) can 3015737..3016393 (+) 657 WP_195704254.1 carbonate dehydratase -
  IUZ65_RS13735 (IUZ65_013735) hpt 3016488..3017018 (-) 531 WP_195704255.1 hypoxanthine phosphoribosyltransferase -
  IUZ65_RS13740 (IUZ65_013740) opaR 3017363..3017974 (+) 612 WP_195704256.1 TetR/AcrR family transcriptional regulator Regulator
  IUZ65_RS13745 (IUZ65_013745) lpdA 3018079..3019503 (-) 1425 WP_195704257.1 dihydrolipoyl dehydrogenase -
  IUZ65_RS13750 (IUZ65_013750) aceF 3019772..3021649 (-) 1878 WP_195704258.1 pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase -

Sequence

Protein


Download         Length: 203 a.a.        Molecular weight: 23743.06 Da        Isoelectric Point: 6.2945

>NTDB_id=630232 IUZ65_RS13740 WP_195704256.1 3017363..3017974(+) (opaR) [Vibrio sp. VB16]
MDMIKKHPRTRLSPQKRKLQLMDIALDVFARRGIGRGGHADIAEIAQVSVATVFNYFPTREDLVDEVLHHVVRQFSAFLN
ENIDTSLHAKENLKNTADNMCELVLQNEHWLKVWFEWSASARDEVWPLYVSLNKNSRLLVENMFSQSIERGEICENQKPE
NLAKMFHAICYAIYLEANRNNDKQHLDQFTDSFLNMLCIYKED

Nucleotide


Download         Length: 612 bp        

>NTDB_id=630232 IUZ65_RS13740 WP_195704256.1 3017363..3017974(+) (opaR) [Vibrio sp. VB16]
ATGGACATGATAAAGAAACATCCTCGGACTCGTTTGTCCCCGCAAAAACGTAAATTGCAATTAATGGATATTGCATTAGA
CGTTTTTGCCCGTCGTGGTATAGGCCGTGGTGGCCACGCCGATATAGCTGAAATTGCACAAGTTTCAGTTGCTACGGTTT
TCAATTATTTCCCTACAAGAGAAGACCTCGTCGACGAGGTATTACACCATGTTGTTCGTCAGTTTTCTGCTTTTCTCAAT
GAGAATATAGACACTTCTTTACATGCTAAAGAAAATCTTAAAAACACAGCAGATAATATGTGTGAACTGGTATTACAAAA
TGAGCACTGGTTAAAAGTGTGGTTTGAGTGGAGTGCATCAGCTCGCGATGAAGTGTGGCCGCTTTATGTTTCTCTCAATA
AAAACAGTCGACTATTAGTAGAAAACATGTTTTCCCAGTCTATTGAACGTGGGGAGATATGTGAAAATCAAAAACCTGAA
AACCTGGCTAAAATGTTTCATGCCATCTGTTACGCTATCTATTTGGAAGCGAATCGTAACAATGATAAACAACATCTTGA
CCAGTTCACCGATAGTTTTTTGAATATGCTTTGTATCTATAAAGAAGATTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, tetR family (TetR_N)

(22-67)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  opaR Vibrio parahaemolyticus RIMD 2210633

66.502

100

0.665
  hapR Vibrio cholerae C6706

64.141

97.537

0.626
  hapR Vibrio cholerae strain A1552

64.141

97.537

0.626